Structure of PDB 3r2c Chain A Binding Site BS01
Receptor Information
>3r2c Chain A (length=138) Species:
63363
(Aquifex aeolicus) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKL
VDTAVRHIEEIDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEP
GRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSS
Ligand information
>3r2c Chain R (length=9) [
Search RNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
ggcuccuug
.........
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
3r2c
Structural basis for RNA recognition by NusB and NusE in the initiation of transcription antitermination.
Resolution
1.902 Å
Binding residue
(original residue number in PDB)
M1 R2 K5 H68 K70 L77 E81 E99 G101 R102 F104 I105 D106 V108 D109 K112 K118 F122 N124 G125 S128 A129 K132
Binding residue
(residue number reindexed from 1)
M1 R2 K5 H68 K70 L77 E81 E99 G101 R102 F104 I105 D106 V108 D109 K112 K118 F122 N124 G125 S128 A129 K132
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
Biological Process
GO:0006353
DNA-templated transcription termination
GO:0006355
regulation of DNA-templated transcription
GO:0031564
transcription antitermination
Cellular Component
GO:0005829
cytosol
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:3r2c
,
PDBe:3r2c
,
PDBj:3r2c
PDBsum
3r2c
PubMed
21652641
UniProt
O66530
|NUSB_AQUAE Transcription antitermination protein NusB (Gene Name=nusB)
[
Back to BioLiP
]