Structure of PDB 3qbo Chain A Binding Site BS01

Receptor Information
>3qbo Chain A (length=358) Species: 214092 (Yersinia pestis CO92) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QVYNFSAGPAMLPVEVLRRAQQELRDWHGLGTSVMEVSHRSKEFMQVAEE
SEKDLRDLLNVPANYKVLFCHGGARAQFAAVPLNLLGDRNSADYVDGGYW
AHSAIKEAQKYCTPNVIDVTTHDNGLTGIQPMKQWKLSDNAAYVHYCPNE
TIDGIAIDEQPDFGNKVVVADFSSSILSRPIDVSRYGVIYAGAQKNIGPA
GLTLVIVREDLLGKAHTALPSILDYKILADNDSMFNTPPTFAWYLSGLVF
KWLKEQGGLGEMEKRNQAKAELLYGAIDRTGFYRNDVAITNRSWMNVPFQ
MADASLDKLFLSEAEAQGLQALKGHRVAGGMRASIYNAMPIEGVKALTDF
MADFERRH
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain3qbo Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3qbo Crystal structure of phosphoserine aminotransferase from Yersinia pestis CO92
Resolution2.36 Å
Binding residue
(original residue number in PDB)		G75 A76 R77 W102 T153 D173 S175 Q196 K197
Binding residue
(residue number reindexed from 1)		G73 A74 R75 W100 T151 D171 S173 Q194 K195
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Dec 3 00:10:12 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '3qbo', asym_id = 'A', bs = 'BS01', title = 'Crystal structure of phosphoserine aminotransferase from Yersinia pestis CO92'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='3qbo', asym_id='A', bs='BS01', title='Crystal structure of phosphoserine aminotransferase from Yersinia pestis CO92')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004648,0006564', uniprot = '', pdbid = '3qbo', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004648,0006564', uniprot='', pdbid='3qbo', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>