Structure of PDB 3pu4 Chain A Binding Site BS01

Receptor Information
>3pu4 Chain A (length=421) Species: 11277 (Vesicular stomatitis Indiana virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDL
RGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDT
IGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPE
YRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMF
FHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILN
REVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWG
QLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVG
DNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAV
MSLQGLREKTIGKYAKSEFDK
Ligand information
>3pu4 Chain R (length=45) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuuu
.............................................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3pu4 Access to RNA Encapsidated in the Nucleocapsid of Vesicular Stomatitis Virus.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		R143 M149 E151 K155 N162 Y215 V219 D224 A226 K286 S287 S290 S291 V292 H298 R312 A316 R317 R408
Binding residue
(residue number reindexed from 1)		R142 M148 E150 K154 N161 Y214 V218 D223 A225 K285 S286 S289 S290 V291 H297 R311 A315 R316 R407
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0019083 viral transcription
GO:0039703 RNA replication
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3pu4, PDBe:3pu4, PDBj:3pu4
PDBsum3pu4
PubMed21177817
UniProtP03521|NCAP_VSIVA Nucleoprotein (Gene Name=N)

[Back to BioLiP]