Structure of PDB 3pt1 Chain A Binding Site BS01

Receptor Information
>3pt1 Chain A (length=464) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMTIPGRFMTIDKGTFGEYTASTRWPIIIQNAIDDLSKHQETEKSNGTKF
EQGEVIKKELKEFRQEIIDRVPLRPFTEEEIKIANVPLSFNEYLKKHPEV
NWGAVEWLFSEVYLYRRVNVLFQRQCEWAKFDIFNRLKQSTFESSFYGVV
ELALRYENLLPQLREMKQNDDILKVLFKEFIEISLWGNATDLSLLTNATL
EDIKSIQGAKARAASESKIVVNDTEKAWEVLTKARADANSREIRVDFVLD
NSGFELYADLMLAAFLLQSGLATKCIFHAKDIPYMVSDVMLKDFDILVHD
LRDREFFPSGEPSTKESRALDLFAGEMEKFVSSGKIEFREDSFWTTELDY
WNLDANETKYHGSILHKDLQKSNLVIFKGDLNYRKLTGDRKWPRTTKWET
AIGPLATNGITSLSLRTCKADVQVALPEGLDAKLSQEWEKENPGRGSWWC
CSGKWAVICFCSGI
Ligand information
Ligand IDF6P
InChIInChI=1S/C6H13O9P/c7-2-6(10)5(9)4(8)3(15-6)1-14-16(11,12)13/h3-5,7-10H,1-2H2,(H2,11,12,13)/t3-,4-,5+,6-/m1/s1
InChIKeyBGWGXPAPYGQALX-ARQDHWQXSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(O)(O)OCC1OC(O)(CO)C(O)C1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(O1)(CO)O)O)O)OP(=O)(O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@](O1)(CO)O)O)O)OP(=O)(O)O
CACTVS 3.341OC[C]1(O)O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O
CACTVS 3.341OC[C@@]1(O)O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]1O
FormulaC6 H13 O9 P
Name6-O-phosphono-beta-D-fructofuranose;
FRUCTOSE-6-PHOSPHATE;
6-O-phosphono-beta-D-fructose;
6-O-phosphono-D-fructose;
6-O-phosphono-fructose
ChEMBLCHEMBL604196
DrugBank
ZINCZINC000004096690
PDB chain3pt1 Chain A Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3pt1 Structure and activity of a DUF89 protein from Saccharomyces cerevisiae revealed a novel family of carbohydrate phosphatases
Resolution1.773 Å
Binding residue
(original residue number in PDB)
R23 E110 D254 G383 D384 L385 R388 K423
Binding residue
(residue number reindexed from 1)
R24 E111 D250 G379 D380 L381 R384 K419
Annotation score5
Enzymatic activity
Enzyme Commision number 3.1.3.-
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0016791 phosphatase activity
GO:0046872 metal ion binding
GO:0097023 fructose 6-phosphate aldolase activity
GO:0103026 fructose-1-phosphatase activity
Biological Process
GO:0006974 DNA damage response
GO:0008150 biological_process
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:3pt1, PDBe:3pt1, PDBj:3pt1
PDBsum3pt1
PubMed
UniProtQ04371|ARMT1_YEAST Damage-control phosphatase YMR027W (Gene Name=YMR027W)

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