Structure of PDB 3pax Chain A Binding Site BS01

Receptor Information
>3pax Chain A (length=350) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYS
ILNEVQQAVSDGGSESQILDLSNRFYTLIPHDFGMKKPPLLSNLEYIQAK
VQMLDNLLDIEVAYSLLRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEA
KIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLW
HGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTS
QADPIGLILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTAT
TTLDGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYKT
Ligand information
Ligand ID3MB
InChIInChI=1S/C8H9NO2/c1-11-7-4-2-3-6(5-7)8(9)10/h2-5H,1H3,(H2,9,10)
InChIKeyVKPLPDIMEREJJF-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(c1cc(OC)ccc1)N
CACTVS 3.341COc1cccc(c1)C(N)=O
OpenEye OEToolkits 1.5.0COc1cccc(c1)C(=O)N
FormulaC8 H9 N O2
Name3-METHOXYBENZAMIDE
ChEMBLCHEMBL123978
DrugBankDB03073
ZINCZINC000004521662
PDB chain3pax Chain A Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3pax Inhibitor and NAD+ binding to poly(ADP-ribose) polymerase as derived from crystal structures and homology modeling.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		H862 G863 Y896 F897 K903 S904 Y907 E988
Binding residue
(residue number reindexed from 1)		H201 G202 Y235 F236 K242 S243 Y246 E327
Annotation score2
Binding affinityMOAD: ic50=10uM
PDBbind-CN: -logKd/Ki=5.00,IC50=10uM
Enzymatic activity
Catalytic site (original residue number in PDB) S904 Y907 E988
Catalytic site (residue number reindexed from 1) S243 Y246 E327
Enzyme Commision number 2.4.2.-
2.4.2.30: NAD(+) ADP-ribosyltransferase.
Gene Ontology
Molecular Function
GO:0003950 NAD+-protein poly-ADP-ribosyltransferase activity

View graph for
Molecular Function
External links
PDB RCSB:3pax, PDBe:3pax, PDBj:3pax
PDBsum3pax
PubMed9521710
UniProtP26446|PARP1_CHICK Poly [ADP-ribose] polymerase 1 (Gene Name=PARP1)

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