Structure of PDB 3p8y Chain A Binding Site BS01
Receptor Information
>3p8y Chain A (length=294) Species:
29292
(Pyrococcus abyssi) [
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MNAVEIISRDIYKAIDIQTKILDYMTKFFTDRGFKWLLPIMLSPITDPLW
PDPAGEGIRPAEVDVYGVRMRLTHSMILHKQLAIAMGLEKIFVLSPNIRL
ESRRKDDGRHSYEFTQLDFEIEGAKMKDVMRLIEELIYGLFRKAEEWTGR
EFPRARHFKVYDYKDILEEFGSDEKASMEMEEPFWIVNIPREFYDREENG
VWKNYDLILPYGYGEVSSGGEREWEYEKIVAKIRAAGLKEDSFRPYLEIA
RAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRVPGIPAVI
Ligand information
Ligand ID
ASN
InChI
InChI=1S/C4H8N2O3/c5-2(4(8)9)1-3(6)7/h2H,1,5H2,(H2,6,7)(H,8,9)/t2-/m0/s1
InChIKey
DCXYFEDJOCDNAF-REOHCLBHSA-N
SMILES
Software
SMILES
CACTVS 3.370
N[C@@H](CC(N)=O)C(O)=O
ACDLabs 12.01
O=C(N)CC(N)C(=O)O
CACTVS 3.370
N[CH](CC(N)=O)C(O)=O
OpenEye OEToolkits 1.7.2
C(C(C(=O)O)N)C(=O)N
OpenEye OEToolkits 1.7.2
C([C@@H](C(=O)O)N)C(=O)N
Formula
C4 H8 N2 O3
Name
ASPARAGINE
ChEMBL
CHEMBL58832
DrugBank
DB00174
ZINC
ZINC000001532556
PDB chain
3p8y Chain A Residue 295 [
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Receptor-Ligand Complex Structure
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PDB
3p8y
Crystal Structure of the Archaeal Asparagine Synthetase: Interrelation with Aspartyl-tRNA and Asparaginyl-tRNA Synthetases.
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
Q116 S218 R222 A261
Binding residue
(residue number reindexed from 1)
Q116 S218 R222 A261
Annotation score
5
Enzymatic activity
Catalytic site (original residue number in PDB)
R99 E101 R109 H110
Catalytic site (residue number reindexed from 1)
R99 E101 R109 H110
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0000166
nucleotide binding
GO:0004812
aminoacyl-tRNA ligase activity
GO:0004816
asparagine-tRNA ligase activity
GO:0005524
ATP binding
GO:0046872
metal ion binding
Biological Process
GO:0006412
translation
GO:0006418
tRNA aminoacylation for protein translation
GO:0006421
asparaginyl-tRNA aminoacylation
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Molecular Function
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Biological Process
External links
PDB
RCSB:3p8y
,
PDBe:3p8y
,
PDBj:3p8y
PDBsum
3p8y
PubMed
21820443
UniProt
Q9V228
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