Structure of PDB 3mx9 Chain A Binding Site BS01

Receptor Information

>3mx9 Chain A (length=298) Species: 3055 (Chlamydomonas reinhardtii)

NTKYNKEFLLYLAGFVDGDGSIIAQINPNQSSKFKHRLRLTFYVTQKTQR
RWFLDKLVDEIGVGYVRDSGSVSQYVLSEIKPLHNFLTQLQPFLKLKQKQ
ANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAS
NKEFLLYLAGFVDSDGSIIAQIKPRQSNKFKHQLSLTFAVTQKTQRRWFL
DKLVDEIGVGYVYDSGSVSDYRLSEIKPLHNFLTQLQPFLKLKQKQANLV
LKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD

Ligand information

>3mx9 Chain C (length=24)

ttgttctcaggtacctcagccaga

Receptor-Ligand Complex Structure

Structure summary

• PDB: 3mx9 Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus.
• Resolution: 2.6 Å
• Binding residue (original residue number in PDB): D20 G21 S22 I24 Q26 Y44 T46 Q47 K48 R51 Q75 N136 D137 S138 R141 K142 R221 S223 N224 K225 Q229 Y257 Y259 S261 E271 I272 K330
• Binding residue (residue number reindexed from 1): D19 G20 S21 I23 Q25 Y43 T45 Q46 K47 R50 Q74 N135 D136 S137 R140 K141 R175 S177 N178 K179 Q183 Y211 Y213 S215 E225 I226 K284
• Binding affinity: PDBbind-CN: Kd=45nM

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 12:28:17 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '3mx9', asym_id = 'A', bs = 'BS01', title = 'Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='3mx9', asym_id='A', bs='BS01', title='Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0004519', uniprot = '', pdbid = '3mx9', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004519', uniprot='', pdbid='3mx9', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>