Structure of PDB 3mje Chain A Binding Site BS01
Receptor Information
>3mje Chain A (length=470) Species:
40318
(Streptomyces nodosus) [
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SHMDALRYHIEWNRVAEPGTARPAGRLLAVISPDHAGAPWVTAVLDALGP
DTVRFEAKGTDRAAWAAQLAQLREDEGEFHAVVSLLAAAEALHTDHGSVP
LGLAQTLLLAQALGDAGLTAPLWCLTRGGVAAGRGDVLSSPVQGALWGLG
RVIGLEHPDRWGGLIDLPETVDTRAAARLTGLLADAGGEDQLAIRGSGVL
ARRLAHAAPAVPGSGKRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLV
LTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA
PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLD
AFVLFSSGAAVWGSGGQPGYAAANAYLDALAEHRRSLGLTASSVAWGTWG
EVGMHDRLVRQGVLAMEPEHALGALDQMLENDDTAAAITLMDWEMFAPAF
TANRPSALLSTVPEAVSALS
Ligand information
Ligand ID
NDP
InChI
InChI=1S/C21H30N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1,3-4,7-8,10-11,13-16,20-21,29-31H,2,5-6H2,(H2,23,32)(H,36,37)(H,38,39)(H2,22,24,25)(H2,33,34,35)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
ACFIXJIJDZMPPO-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
CACTVS 3.341
NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
Formula
C21 H30 N7 O17 P3
Name
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
ChEMBL
CHEMBL407009
DrugBank
DB02338
ZINC
ZINC000008215411
PDB chain
3mje Chain A Residue 476 [
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Receptor-Ligand Complex Structure
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PDB
3mje
Structural and Functional Analysis of A-Type Ketoreductases from the Amphotericin Modular Polyketide Synthase.
Resolution
1.36 Å
Binding residue
(original residue number in PDB)
G225 G229 I230 S250 R251 R252 A280 S305 A306 G307 K330 S353 S354 Y367 W393 G394 T395 W396 G400 M401
Binding residue
(residue number reindexed from 1)
G228 G232 I233 S253 R254 R255 A283 S308 A309 G310 K333 S356 S357 Y370 W396 G397 T398 W399 G403 M404
Annotation score
4
Enzymatic activity
Enzyme Commision number
1.1.1.100
: 3-oxoacyl-[acyl-carrier-protein] reductase.
External links
PDB
RCSB:3mje
,
PDBe:3mje
,
PDBj:3mje
PDBsum
3mje
PubMed
20696392
UniProt
Q93NW7
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