Structure of PDB 3mcy Chain A Binding Site BS01

Receptor Information
>3mcy Chain A (length=158) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FACKTANGTAIPIGGGSANVYVNLAPVVNVGQNLVVDLSTQIFCHNDYPE
TITDYVTLQRGSAYGGVLSNFSGTVKYSGSSYPFPTTSETPRVVYNSRTD
KPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNSDDFQFVWNIYA
NNDVVVPT
Ligand information
Ligand IDZH1
InChIInChI=1S/C20H22O8/c1-26-19(25)13-4-2-3-12(9-13)11-5-7-14(8-6-11)27-20-18(24)17(23)16(22)15(10-21)28-20/h2-9,15-18,20-24H,10H2,1H3/t15-,16-,17+,18+,20+/m1/s1
InChIKeyGDSLRMGPZWIAEZ-JGLNRKDHSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0COC(=O)c1cccc(c1)c2ccc(cc2)OC3C(C(C(C(O3)CO)O)O)O
CACTVS 3.370COC(=O)c1cccc(c1)c2ccc(O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O)cc2
OpenEye OEToolkits 1.7.0COC(=O)c1cccc(c1)c2ccc(cc2)O[C@@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O
CACTVS 3.370COC(=O)c1cccc(c1)c2ccc(O[C@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]3O)cc2
ACDLabs 12.01O=C(OC)c1cccc(c1)c3ccc(OC2OC(C(O)C(O)C2O)CO)cc3
FormulaC20 H22 O8
Namemethyl 4'-(alpha-D-mannopyranosyloxy)biphenyl-3-carboxylate
ChEMBLCHEMBL1171277
DrugBank
ZINCZINC000064321342
PDB chain3mcy Chain A Residue 182 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3mcy Structure-based drug design and optimization of mannoside bacterial FimH antagonists.
Resolution2.9 Å
Binding residue
(original residue number in PDB)
F1 N46 D47 Y48 D54 Q133 N135 D140
Binding residue
(residue number reindexed from 1)
F1 N46 D47 Y48 D54 Q133 N135 D140
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009289 pilus

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:3mcy, PDBe:3mcy, PDBj:3mcy
PDBsum3mcy
PubMed20507142
UniProtQ9S497

[Back to BioLiP]