Structure of PDB 3lv2 Chain A Binding Site BS01

Receptor Information
>3lv2 Chain A (length=421) Species: 1773 (Mycobacterium tuberculosis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GLTPEQIIAVDGAHLWHPYSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSW
WTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAG
LDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLA
MSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGEL
AAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTG
ALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAALMRG
PTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVT
DVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPFRNLVYAMPPYICTP
AEITQITSAMVEVARLVGSLP
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain3lv2 Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3lv2 Structural characterization of the Mycobacterium tuberculosis biotin biosynthesis enzymes 7,8-diaminopelargonic acid synthase and dethiobiotin synthetase .
Resolution2.18 Å
Binding residue
(original residue number in PDB)		G124 S125 Y157 H158 E220 D254 I256 K283
Binding residue
(residue number reindexed from 1)		G110 S111 Y143 H144 E206 D240 I242 K269
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) Y157 E220 D254 A257 K283 Y407
Catalytic site (residue number reindexed from 1) Y143 E206 D240 A243 K269 Y391
Enzyme Commision number 2.6.1.62: adenosylmethionine--8-amino-7-oxononanoate transaminase.
Gene Ontology
Molecular Function
GO:0004015 adenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0008483 transaminase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0009102 biotin biosynthetic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3lv2, PDBe:3lv2, PDBj:3lv2
PDBsum3lv2
PubMed20565114
UniProtP9WQ81|BIOA_MYCTU Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (Gene Name=bioA)

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