Structure of PDB 3k84 Chain A Binding Site BS01

Receptor Information
>3k84 Chain A (length=546) Species: 10116 (Rattus norvegicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GRQKARGAATRARQKQRASLETMDKAVQRFRLQNPDLDSEALLTLPLLQL
VQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQG
LLYGVPVSLKECFSYKGHDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPF
VHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPL
GLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGP
MARDVESLALCLKALLCEHLFTLDPTVPPLPFREEVYRSSRPLRVGYYET
DNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFS
DGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAF
LNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLN
TPGRATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWD
IILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQP
Ligand information
Ligand IDK84
InChIInChI=1S/C25H37N3O2/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-20-23(29)25-28-27-24(30-25)22-19-17-18-21-26-22/h9-10,17-19,21H,2-8,11-16,20H2,1H3/b10-9-
InChIKeySUSLQAWJWPTQHX-KTKRTIGZSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0CCCCCCCCC=CCCCCCCCC(=O)c1nnc(o1)c2ccccn2
CACTVS 3.352CCCCCCCC\C=C/CCCCCCCC(=O)c1oc(nn1)c2ccccn2
CACTVS 3.352CCCCCCCCC=CCCCCCCCC(=O)c1oc(nn1)c2ccccn2
OpenEye OEToolkits 1.7.0CCCCCCCC/C=C\CCCCCCCC(=O)c1nnc(o1)c2ccccn2
ACDLabs 11.02O=C(c1nnc(o1)c2ncccc2)CCCCCCC\C=C/CCCCCCCC
FormulaC25 H37 N3 O2
Name(9Z)-1-(5-pyridin-2-yl-1,3,4-oxadiazol-2-yl)octadec-9-en-1-one
ChEMBLCHEMBL178563
DrugBank
ZINC
PDB chain3k84 Chain A Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3k84 X-ray crystallographic analysis of alpha-ketoheterocycle inhibitors bound to a humanized variant of fatty acid amide hydrolase.
Resolution2.25 Å
Binding residue
(original residue number in PDB)		M191 F192 S193 S217 T236 I238 G239 S241 T377 T488 W531
Binding residue
(residue number reindexed from 1)		M159 F160 S161 S185 T204 I206 G207 S209 T345 T456 W499
Annotation score1
Binding affinityPDBbind-CN: -logKd/Ki=8.52,Ki=0.003uM
BindingDB: Ki=3nM
Enzymatic activity
Catalytic site (original residue number in PDB) K142 S217 S218 T236 I238 G239 G240 S241 F244
Catalytic site (residue number reindexed from 1) K110 S185 S186 T204 I206 G207 G208 S209 F212
Enzyme Commision number 3.1.1.-
3.5.1.99: fatty acid amide hydrolase.
Gene Ontology
Molecular Function
GO:0004040 amidase activity
GO:0005515 protein binding
GO:0005543 phospholipid binding
GO:0008289 lipid binding
GO:0016787 hydrolase activity
GO:0016788 hydrolase activity, acting on ester bonds
GO:0017064 fatty acid amide hydrolase activity
GO:0042802 identical protein binding
GO:0047372 monoacylglycerol lipase activity
Biological Process
GO:0006631 fatty acid metabolic process
GO:0009062 fatty acid catabolic process
GO:0016042 lipid catabolic process
GO:0045907 positive regulation of vasoconstriction
GO:0052651 monoacylglycerol catabolic process
GO:0150036 regulation of trans-synaptic signaling by endocannabinoid, modulating synaptic transmission
Cellular Component
GO:0000139 Golgi membrane
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005794 Golgi apparatus
GO:0016020 membrane
GO:0031090 organelle membrane
GO:0098793 presynapse
GO:0098794 postsynapse
GO:0098978 glutamatergic synapse

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3k84, PDBe:3k84, PDBj:3k84
PDBsum3k84
PubMed19924997
UniProtP97612|FAAH1_RAT Fatty-acid amide hydrolase 1 (Gene Name=Faah)

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