Structure of PDB 3jby Chain A Binding Site BS01

Receptor Information
>3jby Chain A (length=550) Species: 7955 (Danio rerio) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRNAEKEL
LPGFHQFEWQPALKNVSTSWDVGIIDGLSGWTVSVDDVPADTISRRFRYD
VALVSALKDLEEDIMEGLRERALDDSMCTSGFTVVVKESCDGMGDVSEKH
GSGPAVPEKAVRFSFTIMSISIRLEGEDDGITIFQEQKPNSELSCRPLCL
MFVDESDHETLTAILGPVVAERKAMMESRLIISVGGLLRSFRFFFRGTGY
DEKMVREMEGLEASGSTYICTLCDSTRAEASQNMVLHSITRSHDENLERY
EIWRKNPFSESADELRDRVKGVSAKPFMETQPTLDALHCDIGNATEFYKI
FQDEIGEVYQKPNPSREERRRWRSTLDKQLRKKMKLKPVMRMNGNYARRL
MTREAVEAVCELVPSEERREALLKLMDLYLQMKPVWRSTCPSRDCPDQLC
QYSYNSQQFADLLSSMFKYRYDGKITNYLHKTLAHVPEIVERDGSIGAWA
SEGNESGNKLFRRFRKMNARQSKTFELEDILKHHWLYTSKYLQKFMEAHK
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3jby Molecular Mechanism of V(D)J Recombination from Synaptic RAG1-RAG2 Complex Structures.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		S496 C497 S498 R523 M996 N997 A998 R999 D1008 K1011
Binding residue
(residue number reindexed from 1)		S17 C18 S19 R44 M517 N518 A519 R520 D529 K532
Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
3.1.-.-
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding
GO:0061630 ubiquitin protein ligase activity
Biological Process
GO:0033151 V(D)J recombination

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Molecular Function
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Biological Process
External links
PDB RCSB:3jby, PDBe:3jby, PDBj:3jby
PDBsum3jby
PubMed26548953
UniProtO13033|RAG1_DANRE V(D)J recombination-activating protein 1 (Gene Name=rag1)

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