Structure of PDB 3jb6 Chain A Binding Site BS01

Receptor Information
>3jb6 Chain A (length=1196) Species: 110829 (Bombyx mori cypovirus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TKLHNTIFSETRKFTRESFKEIEHLTARLANDRVARHDFLFNTSIVLISD
YSGEDSNGNQLQATITIPNEIINPKEYDPSDYPLAEDESFFKQGHKYDYL
VTFRAGSLTNTYEPKTKMYKLHAALDKLMHVKQRKSRFADLWRELCAVIA
SLDVWYQTTNYPLRTYVKLLFHKGDEFPFYESPSQDRIIFNDKSVASILP
TFVYTCCQVGTAIMSGILTHVESIVAMNHFLHCAKDSYIDEKLKIKGIGR
SWYQEALHNVCQATVPVWSQFNEVIGHRTKSTSEPHFVSSTFISLRAKRA
ELLYPEFNAYINRAIQLSKTQNDVANYYAACRAMTNDGTFLATLTELSLD
AAVFPRIEQHLVTRPAVLMSNTRHESLKQKYTNGVGSIAQSYLSSFTDEI
AKRVNGRHHDEAWLNFLTTSRIVMQAVFAREYRTPERIFKSLKAPIKLVE
RQQSDRRQRAISGLDNDRLFLSFMPYTIGKQIYELNDNAAQGKQAGNAFD
IGEMLYWTSQRNVLLSSIDVAGMDASVTTNTKDIYNTFVLDVASKCTVPR
FGPYYAKNMEVFEAGNRQSQVRYVNAAWQACALEAANSQTSTSYESEIFG
QVKNAEGTYPSGRADTSTHHTVLLQGLVRGNELKRASDGKNSCLATIKIL
GDDIMEIFQGSESDTYDHAVSNASILNESGFATTAELSQNSIVLLQQLVV
NGTFWGFADRISLWTREDTKDIGRLNLAMMELNALIDDLVFRVRRPEGLK
MLGFFCGAICLRRFTLSVDNKLYDSTYNNLSKYMTLTKYDKNPDSDSTLM
SLILPLAWLFMPRGGEYPAYPFERRDGTFTEDESMFTARGAYKRRLLYDV
SNIGEMIQQNSMALDDDLLHEYGFTGALLLIDLNILDLIDEVKKEDISPV
KVSELATSLEQLGKLGEREKSRRAASDLKIRGHALSNDIVYGYGLQEKIQ
KSAMATKETTVQSKRVSSRLHDVIVAKTRDYKISTIPADALHLHEFEVED
VTVDLLPHAKHTSYSSLAYNMSFGSDGWFAFALLGGLDRSANLLRLDVAS
IRGNYHKFSYDDPVFKQGYKIYKSDATLLNDFFTAISAGPKEQGILLRAF
AYYSLYGNVEYHYVLSPRQLFFLSDNPVSAERLVRIPPKYYVSTQCRALY
NIFSYLHILRSIANNRGKRLKMVLHPGLIAYVRGTSQGAILPEADN
Ligand information
>3jb6 Chain C (length=21) Species: 110829 (Bombyx mori cypovirus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
VQSRTDVFNEQFANEALHPMT
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3jb6 In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		A370 T386 N594
Binding residue
(residue number reindexed from 1)		A366 T382 N566
Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003968 RNA-dependent RNA polymerase activity
Biological Process
GO:0001172 RNA-templated transcription
GO:0019079 viral genome replication

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3jb6, PDBe:3jb6, PDBj:3jb6
PDBsum3jb6
PubMed26503045
UniProtD0EZK6

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