Structure of PDB 3ilp Chain A Binding Site BS01

Receptor Information
>3ilp Chain A (length=266) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQGK
LSNQQWEKLQHMFQVYRVSFTRDIQELVKMMKEDYPIEIQLSAGCEMYAS
ESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQGTSATVQM
LLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSVPSSAGHRQLVCHVSGF
YPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGLAC
RVKHSSLGGQDIILYW
Ligand information
Ligand ID1L2
InChIInChI=1S/C45H80O10/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-40(47)52-36-38(37-53-45-44(51)43(50)42(49)39(35-46)55-45)54-41(48)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h11,13,17-20,38-39,42-46,49-51H,3-10,12,14-16,21-37H2,1-2H3/b13-11-,19-17-,20-18-/t38-,39-,42+,43+,44-,45+/m1/s1
InChIKeyWSLQQXBIZJMBGG-JQWDYJJRSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0CCCCCCCCC=CCCCCCCCC(=O)OC(COC1C(C(C(C(O1)CO)O)O)O)COC(=O)CCCCCCCC=CCC=CCCCCC
ACDLabs 11.02O=C(OCC(OC(=O)CCCCCCC\C=C/CCCCCCCC)COC1OC(C(O)C(O)C1O)CO)CCCCCCC\C=C/C\C=C/CCCCC
CACTVS 3.352CCCCCCCCC=CCCCCCCCC(=O)O[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)COC(=O)CCCCCCCC=CCC=CCCCCC
CACTVS 3.352CCCCCCCC\C=C/CCCCCCCC(=O)O[C@@H](CO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)COC(=O)CCCCCCC\C=C/C/C=C\CCCCC
OpenEye OEToolkits 1.7.0CCCCCCCC/C=C\CCCCCCCC(=O)O[C@@H](CO[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)COC(=O)CCCCCCC/C=C\C/C=C\CCCCC
FormulaC45 H80 O10
Name(2S)-3-(alpha-D-galactopyranosyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl (9Z,12Z)-octadeca-9,12-dienoate;
1-linoleoyl,2-oleoyl-3-O-(alpha-D-galactopyranosyl)-sn-glycerol
ChEMBL
DrugBank
ZINCZINC000098207988
PDB chain3ilp Chain A Residue 286 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3ilp Lipid binding orientation within CD1d affects recognition of Borrelia burgorferi antigens by NKT cells.
Resolution1.85 Å
Binding residue
(original residue number in PDB)
S28 V30 M69 F70 Y73 S76 F77 D80 L84 F120 W133 W142 D153 T156
Binding residue
(residue number reindexed from 1)
S21 V23 M62 F63 Y66 S69 F70 D73 L77 F108 W121 W130 D141 T144
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:3ilp, PDBe:3ilp, PDBj:3ilp
PDBsum3ilp
PubMed20080535
UniProtP11609|CD1D1_MOUSE Antigen-presenting glycoprotein CD1d1 (Gene Name=Cd1d1)

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