Structure of PDB 3hdb Chain A Binding Site BS01

Receptor Information

>3hdb Chain A (length=417) Species: 36307 (Deinagkistrodon acutus)

YDPFKYVETVFVVDKAMVTKYNGDLDKIKTKMYEAANNMNEMYRYMFFRV
VMVGLIIWTEEDKITVKPDVDYTLNAFAEWRKTYLLAEKKHDNAQLITGI
DFRGSIIGYAYIGSMCHPKRSVGIIQDYSPINLVLAVIMAHEMGHNLGIH
HDDGYCYCGGYPCIMGPSISPEPSKFFSNCSYIQCWDFIMNHNPECIDNE
PLGTDIISPPLCGNELLEVGEECDCGTPENCQNPCCDAATCKLKSGSQCG
HGKCCEQCKFRTSGTECRASMSECDPAEHCTGQSSECPADVFHKNGEPCL
DNYGYCYNGNCPIMYHQCYALFGADIYEAEDSCFESNKKGNYYGYCRKEN
GKKIPCASEDVKCGRLYCKDDSPGQNNPCKMFYSNDDEHKGMVLPGTKCA
DGKVCSNGHCVDVTTAY

Ligand information

>3hdb Chain L (length=3) Species: 36307 (Deinagkistrodon acutus)

KNL

Receptor-Ligand Complex Structure

Structure summary

• PDB: 3hdb Structural basis of the autolysis of AaHIV suggests a novel target recognizing model for ADAM/reprolysin family proteins
• Resolution: 2.31 Å
• Binding residue (original residue number in PDB): S297 I298 I299 G300 Y320 I330 H333 E334 H343 P359 S360 I361
• Binding residue (residue number reindexed from 1): S105 I106 I107 G108 Y128 I138 H141 E142 H151 P167 S168 I169

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed Feb 19 00:49:46 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '3hdb', asym_id = 'A', bs = 'BS01', title = 'Structural basis of the autolysis of AaHIV sugge...gnizing model for ADAM/reprolysin family proteins'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='3hdb', asym_id='A', bs='BS01', title='Structural basis of the autolysis of AaHIV sugge...gnizing model for ADAM/reprolysin family proteins')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0004222,0006508,0008237', uniprot = '', pdbid = '3hdb', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004222,0006508,0008237', uniprot='', pdbid='3hdb', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>