Structure of PDB 3gq8 Chain A Binding Site BS01

Receptor Information

>3gq8 Chain A (length=604) Species: 10756 (Salasvirus phi29) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

HFADLVIQVIDELKQFGVSVKTYGAKGDGVTDDIRAFEKAIESGFPVYVP
YGTFMVSRGIKLPSNTVLTGAGKRNAVIRFMDSVGRGESLMYNENVTTGN
ENIFLSSFTLDGNNKRLGQGISGIGGSRESNLSIRACHNVYIRDIEAVDC
TLHGIDITCGGLDYPYLGDGTTAPNPSENIWIENCEATGFGDDGITTHHS
QYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEIKAH
GDAPAAYNISINGHMSVEDVRSYNFRHIGHHAATAPQSVSAKNIVASNLV
SIRPNNKRGFQDNATPRVLAVSAYYGVVINGLTGYTDDPNLLTETVVSVQ
FRARNCSLNGVVLTGFSNSENGIYVIGGSRGGDAVNISNVTLNNSGRYGV
SIGSGIENVSITNISGIGDGINSPVALVSTINSNPEISGLSSIGYPTVAR
VAGTDYNDGLTLFNGAFRASTTSSGKIHSEGFIMGSTSGCEASVSKSGVL
TSSSSKTSSERSLIAGSSTSEAKGTYNTILGSLGAVADEQFAALISASQS
RASGNHNLILSSYGINTTGSYKVNGGFEKINWELDSLNGRIKARDTVTGG
NTWS

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

3gq8 Chain A Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	3gq8 Crystallographic insights into the autocatalytic assembly mechanism of a bacteriophage tail spike.
Resolution	2.0 Å
Binding residue (original residue number in PDB)	D279 D280 N305 E310
Binding residue (residue number reindexed from 1)	D192 D193 N218 E223
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:3gq8, PDBe:3gq8, PDBj:3gq8
PDBsum	3gq8
PubMed	19450535
UniProt	P20345\|FIB12_BPPH2 Pre-neck appendage protein (Gene Name=12)

[Back to BioLiP]