Structure of PDB 3g8f Chain A Binding Site BS01

Receptor Information

>3g8f Chain A (length=121) Species: 31159 (Daboia russelii russelii)

SLLEFGKMILEETGKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCC
YGNLPDCNPKSDRYKYKRVNGAIVCEKGTSCENRICECDKAAAICFRQNL
NTYSKKYMLYPDFLCKGELKC

Ligand information

>3g8f Chain B (length=5)

tVARS

Receptor-Ligand Complex Structure

Structure summary

• PDB: 3g8f Crystal Structure of the Complex Formed between a Group II Phospholipase A2 and Designed Peptide Inhibitor Carbobenzoxy-Dehydro-Val-Ala-Arg-Ser at 1.2 A Resolution
• Resolution: 1.25 Å
• Binding residue (original residue number in PDB): L2 W31 H48 D49 Y52 K69
• Binding residue (residue number reindexed from 1): L2 W30 H47 D48 Y51 K60

Enzymatic activity

• Catalytic site (original residue number in PDB): Y28 G30 G32 H48 D49 Y52 Y73 D99
• Catalytic site (residue number reindexed from 1): Y27 G29 G31 H47 D48 Y51 Y64 D89
• Enzyme Commision number: 3.1.1.4: phospholipase A2.

Gene Ontology

Molecular Function

• GO:0004623 phospholipase A2 activity
• GO:0005509 calcium ion binding
• GO:0005543 phospholipid binding
• GO:0016787 hydrolase activity
• GO:0046872 metal ion binding
• GO:0047498 calcium-dependent phospholipase A2 activity
• GO:0090729 toxin activity

Biological Process

• GO:0006644 phospholipid metabolic process
• GO:0016042 lipid catabolic process
• GO:0035821 modulation of process of another organism
• GO:0042130 negative regulation of T cell proliferation
• GO:0050482 arachidonate secretion

Cellular Component

• GO:0005576 extracellular region

External links

• PDB: RCSB:3g8f, PDBe:3g8f, PDBj:3g8f
• PDBsum: 3g8f
• UniProt: P59071|PA2B8_DABRR Basic phospholipase A2 VRV-PL-VIIIa