Structure of PDB 3e6h Chain A Binding Site BS01

Receptor Information
>3e6h Chain A (length=274) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARW
IEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGC
DVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAG
AAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTL
RCWALGFYPADITLTWQLNGEELTQEMELVETRPARDGTFQKWASVVVPL
GKEQKYTCHVEHEGLPEPLTLRWG
Ligand information
>3e6h Chain P (length=10) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
IGPGRAFYTI
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3e6h Different vaccine vectors delivering the same antigen elicit CD8+ T cell responses with distinct clonotype and epitope specificity
Resolution2.1 Å
Binding residue
(original residue number in PDB)		Y7 R62 E63 R66 N70 S73 F74 D77 Y84 W97 W114 T143 W147 R155 Y159 E163 W167 Y171
Binding residue
(residue number reindexed from 1)		Y6 R61 E62 R65 N69 S72 F73 D76 Y83 W96 W113 T142 W146 R154 Y158 E162 W166 Y170
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:3e6h, PDBe:3e6h, PDBj:3e6h
PDBsum3e6h
PubMed19620307
UniProtP01900|HA12_MOUSE H-2 class I histocompatibility antigen, D-D alpha chain (Gene Name=H2-D1)

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