Structure of PDB 3e6f Chain A Binding Site BS01

Receptor Information
>3e6f Chain A (length=273) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARW
IEQEGPEYWERETRRAKGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGC
DVESDGRLLRGYWQFAYDGCDYIALNEDLKTWTAADMAAQITRRKWEQAG
AAERDRAYLEGECVEWLRRYLKNGNATLLRTDPPKAHVTHHRRPEGDVTL
RCWALGFYPADITLTWQLNGEELTQEMELVETRPAGDGTFQKWASVVVPL
GKEQKYTCHVEHEGLPEPLTLRW
Ligand information
>3e6f Chain P (length=9) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
IGPGRAFYA
Receptor-Ligand Complex Structure
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PDB3e6f Different vaccine vectors delivering the same antigen elicit CD8+ T cell responses with distinct clonotype and epitope specificity
Resolution2.41 Å
Binding residue
(original residue number in PDB)		Y7 E63 R66 N70 S73 F74 V76 D77 Y84 W97 W114 T143 K146 W147 A150 A152 Y159 E163 W167 Y171
Binding residue
(residue number reindexed from 1)		Y6 E62 R65 N69 S72 F73 V75 D76 Y83 W96 W113 T142 K145 W146 A149 A151 Y158 E162 W166 Y170
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:3e6f, PDBe:3e6f, PDBj:3e6f
PDBsum3e6f
PubMed19620307
UniProtP01900|HA12_MOUSE H-2 class I histocompatibility antigen, D-D alpha chain (Gene Name=H2-D1)

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