Structure of PDB 3dpr Chain A Binding Site BS01

Receptor Information
>3dpr Chain A (length=269) Species: 12130 (rhinovirus A2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LVVPNINSSNPTTSNSAPALDAAETGHTSSVQPEDVIETRYVQTSQTRDE
MSLESFLGRSGCIHESKLEVTLANYNKENFTVWAINLQEMAQIRRKFELF
TYTRFDSEITLVPCISALSQDIGHITMQYMYVPPGAPVPNSRDDYAWQSG
TNASVFWQHGQAYPRFSLPFLSVASAYYMFYDGYDEQDQNYGTANTNNMG
SLCSRIVTEKHIHKVHIMTRIYHKAKHVKAWCPRPPRALEYTRAHRTNFK
IEDRSIQTAIVTRPIITTA
Ligand information
>3dpr Chain D (length=25) Species: 12130 (rhinovirus A2) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
AQVSRQNYFNINYFKDAASNGASKL
Receptor-Ligand Complex Structure
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PDB3dpr Minor group human rhinovirus-receptor interactions: geometry of multimodular attachment and basis of recognition
Resolution3.5 Å
Binding residue
(original residue number in PDB)		S66 K240 H241
Binding residue
(residue number reindexed from 1)		S52 K226 H227
Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
3.4.22.28: picornain 3C.
3.4.22.29: picornain 2A.
3.6.1.15: nucleoside-triphosphate phosphatase.
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity

View graph for
Molecular Function
External links
PDB RCSB:3dpr, PDBe:3dpr, PDBj:3dpr
PDBsum3dpr
PubMed19073182
UniProtP04936|POLG_HRV2 Genome polyprotein

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