Structure of PDB 3dm0 Chain A Binding Site BS01

Receptor Information

>3dm0 Chain A (length=675) Species: 3702,83333 [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQV
AATGDGPDIIFWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYN
GKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFN
LQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIK
NKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTF
KGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
AVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINA
ASGRQTVDAALAAAQTNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVS
ASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW
DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN
TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN
CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE
ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKKVIYCT
SLNWSADGSTLFSGYTDGVIRVWGI

Ligand information

Ligand ID

GLC

InChI

InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1

InChIKey

WQZGKKKJIJFFOK-DVKNGEFBSA-N

SMILES

Software	SMILES
OpenEye OEToolkits 1.5.0	C(C1C(C(C(C(O1)O)O)O)O)O
OpenEye OEToolkits 1.5.0	C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
CACTVS 3.341	OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341	OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 10.04	OC1C(O)C(OC(O)C1O)CO

Formula

C6 H12 O6

Name

alpha-D-glucopyranose;
alpha-D-glucose;
D-glucose;
glucose

PDB chain

3dm0 Chain B Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	3dm0 Structure of a signal transduction regulator, RACK1, from Arabidopsis thaliana.
Resolution	2.4 Å
Binding residue (original residue number in PDB)	D14 K15 E111 W230
Binding residue (residue number reindexed from 1)	D14 K15 E111 W230
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003729	mRNA binding
GO:0003735	structural constituent of ribosome
GO:0005078	MAP-kinase scaffold activity
GO:0005515	protein binding
GO:0015144	carbohydrate transmembrane transporter activity
GO:0043022	ribosome binding
GO:0045182	translation regulator activity
GO:0060090	molecular adaptor activity
GO:1901982	maltose binding

	Biological Process
GO:0000165	MAPK cascade
GO:0006417	regulation of translation
GO:0006974	DNA damage response
GO:0007165	signal transduction
GO:0008643	carbohydrate transport
GO:0009739	response to gibberellin
GO:0009749	response to glucose
GO:0009845	seed germination
GO:0009967	positive regulation of signal transduction
GO:0010228	vegetative to reproductive phase transition of meristem
GO:0010476	gibberellin mediated signaling pathway
GO:0015768	maltose transport
GO:0034219	carbohydrate transmembrane transport
GO:0034289	detection of maltose stimulus
GO:0042254	ribosome biogenesis
GO:0042956	maltodextrin transmembrane transport
GO:0055085	transmembrane transport
GO:0060326	cell chemotaxis
GO:0071215	cellular response to abscisic acid stimulus

	Cellular Component
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0009507	chloroplast
GO:0016020	membrane
GO:0022626	cytosolic ribosome
GO:0030288	outer membrane-bounded periplasmic space
GO:0042597	periplasmic space
GO:0043190	ATP-binding cassette (ABC) transporter complex
GO:0055052	ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
GO:1990060	maltose transport complex
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:3dm0, PDBe:3dm0, PDBj:3dm0
PDBsum	3dm0
PubMed	18715992
UniProt	O24456; P0AEX9\|MALE_ECOLI Maltose/maltodextrin-binding periplasmic protein (Gene Name=malE)

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