Structure of PDB 3d2w Chain A Binding Site BS01
Receptor Information
>3d2w Chain A (length=72) Species:
10090
(Mus musculus) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKV
AQSLCGEDLIIKGISVHISNAE
Ligand information
>3d2w Chain B (length=9) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
ttgagcgtt
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
3d2w
Structural insights into TDP-43 in nucleic-acid binding and domain interactions
Resolution
1.65 Å
Binding residue
(original residue number in PDB)
K192 F194 R197 F221 R227 F229 F231 S258 E261
Binding residue
(residue number reindexed from 1)
K3 F5 R8 F32 R38 F40 F42 S69 E72
Binding affinity
PDBbind-CN
: Kd=137.5nM
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003676
nucleic acid binding
GO:0003723
RNA binding
View graph for
Molecular Function
External links
PDB
RCSB:3d2w
,
PDBe:3d2w
,
PDBj:3d2w
PDBsum
3d2w
PubMed
19174564
UniProt
Q921F2
|TADBP_MOUSE TAR DNA-binding protein 43 (Gene Name=Tardbp)
[
Back to BioLiP
]