Structure of PDB 3bwv Chain A Binding Site BS01

Receptor Information

>3bwv Chain A (length=167) Species: 176280 (Staphylococcus epidermidis ATCC 12228) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TRQRIAIDMDEVLADTLGAVVKAVNERADLNIKMESLNGKKLGLVMDILK
EPGFFRNLDVMPHAQEVVKQLNEHYDIYIATAAVPTSFHDKYEWLLEYFP
FLDPQHFVFCGRKNIILADYLIDDNPKQLEIFEGKSIMFTASHNVYEHRF
ERVSGWRDVKNYFNSIE

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

3bwv Chain A Residue 300 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	3bwv Crystal structure of deoxyribonucleotidase-like protein (NP_764060.1) from Staphylococcus epidermidis ATCC 12228 at 1.55 A resolution
Resolution	1.55 Å
Binding residue (original residue number in PDB)	D9 D11 D135
Binding residue (residue number reindexed from 1)	D8 D10 D124
Annotation score	1

Enzymatic activity

Catalytic site (original residue number in PDB)	D9 D11
Catalytic site (residue number reindexed from 1)	D8 D10
Enzyme Commision number	3.1.3.-

Gene Ontology

	Molecular Function
GO:0008253	5'-nucleotidase activity
GO:0016787	hydrolase activity
GO:0046872	metal ion binding

	Biological Process
GO:0009223	pyrimidine deoxyribonucleotide catabolic process
GO:0009264	deoxyribonucleotide catabolic process

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Molecular Function

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Biological Process

External links

PDB	RCSB:3bwv, PDBe:3bwv, PDBj:3bwv
PDBsum	3bwv
PubMed
UniProt	Q8CTG7\|53DR_STAES Putative 5'(3')-deoxyribonucleotidase (Gene Name=SE_0505)

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