Structure of PDB 2zsm Chain A Binding Site BS01

Receptor Information
>2zsm Chain A (length=425) Species: 56636 (Aeropyrum pernix) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DVLASGEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTV
DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAPGEAEVLLAE
KILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHD
AVLVAAGGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIV
EPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGY
FNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPI
TMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVES
MMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVFTG
LPHQGEALEIAVEGLRSSLKTVLGS
Ligand information
Ligand IDPMP
InChIInChI=1S/C8H13N2O5P/c1-5-8(11)7(2-9)6(3-10-5)4-15-16(12,13)14/h3,11H,2,4,9H2,1H3,(H2,12,13,14)
InChIKeyZMJGSOSNSPKHNH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1CN)C
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)CN)O
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(CN)c1O
FormulaC8 H13 N2 O5 P
Name4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE;
PYRIDOXAMINE-5'-PHOSPHATE
ChEMBLCHEMBL1235353
DrugBankDB02142
ZINCZINC000001532708
PDB chain2zsm Chain A Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2zsm Crystal structure of glutamate-1-semialdehyde 2,1-aminomutase from Aeropyrum pernix
Resolution2.3 Å
Binding residue
(original residue number in PDB)		S120 G121 T122 Y148 H149 E210 D243 K271
Binding residue
(residue number reindexed from 1)		S117 G118 T119 Y145 H146 E201 D234 K262
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) V27 Y148 E210 D243 V246 K271 A405
Catalytic site (residue number reindexed from 1) V24 Y145 E201 D234 V237 K262 A396
Enzyme Commision number 5.4.3.8: glutamate-1-semialdehyde 2,1-aminomutase.
Gene Ontology
Molecular Function
GO:0008483 transaminase activity
GO:0016853 isomerase activity
GO:0030170 pyridoxal phosphate binding
GO:0042286 glutamate-1-semialdehyde 2,1-aminomutase activity
Biological Process
GO:0006779 porphyrin-containing compound biosynthetic process
GO:0006782 protoporphyrinogen IX biosynthetic process
GO:0033014 tetrapyrrole biosynthetic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2zsm, PDBe:2zsm, PDBj:2zsm
PDBsum2zsm
PubMed
UniProtQ9Y9I9|GSA_AERPE Glutamate-1-semialdehyde 2,1-aminomutase (Gene Name=hemL)

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