Structure of PDB 2ze3 Chain A Binding Site BS01

Receptor Information
>2ze3 Chain A (length=275) Species: 317577 (Deinococcus ficus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MTHADHARSFHALHQTGFLLPNAWDVASARLLEAAGFTAIGTTSAGIAHA
RGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEH
FAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNA
RTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLALQSQDIRALA
DALRVPLNVMAFPGSPVPRALLDAGAARVSFGQSLMLATLGLVQRMAAEL
HAAEQSPLMDSYFLGFGEGHDLFHR
Ligand information
Ligand IDAKG
InChIInChI=1S/C5H6O5/c6-3(5(9)10)1-2-4(7)8/h1-2H2,(H,7,8)(H,9,10)
InChIKeyKPGXRSRHYNQIFN-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(O)C(=O)CCC(=O)O
OpenEye OEToolkits 1.7.6C(CC(=O)O)C(=O)C(=O)O
CACTVS 3.385OC(=O)CCC(=O)C(O)=O
FormulaC5 H6 O5
Name2-OXOGLUTARIC ACID
ChEMBLCHEMBL1686
DrugBankDB08845
ZINCZINC000001532519
PDB chain2ze3 Chain A Residue 276 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2ze3 Crystal structure of DFA0005 complexed with alpha-ketoglutarate: a novel member of the ICL/PEPM superfamily from alkali-tolerant Deinococcus ficus
Resolution1.65 Å
Binding residue
(original residue number in PDB)
N22 T43 S44 A45 D82 R151 S230 G232
Binding residue
(residue number reindexed from 1)
N22 T43 S44 A45 D82 R151 S230 G232
Annotation score4
Binding affinityMOAD: Ki=0.9mM
Gene Ontology
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UnboundLocalError
Python 3.6.8: /usr/bin/python3
Mon Nov 25 12:08:18 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '2ze3', asym_id = 'A', bs = 'BS01', title = 'Crystal structure of DFA0005 complexed with alph...perfamily from alkali-tolerant Deinococcus ficus '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='2ze3', asym_id='A', bs='BS01', title='Crystal structure of DFA0005 complexed with alph...perfamily from alkali-tolerant Deinococcus ficus ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824', uniprot = '', pdbid = '2ze3', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824', uniprot='', pdbid='2ze3', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>