Structure of PDB 2ypc Chain A Binding Site BS01

Receptor Information
>2ypc Chain A (length=214) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPK
EKLELVSYFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKRSYGKAFK
LSISALFVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRASVTL
GCAADVQPVQTGLDLLDILQQVKSQGEAVGELPRGKLYSLGKGRWMLSLT
KKMEVKAIFTGYYG
Ligand information
Ligand IDQQX
InChIInChI=1S/C10H12N5O5PS/c11-8-5-9(13-2-12-8)15(3-14-5)10-7-6(4(1-16)18-10)19-21(17,22)20-7/h2-4,6-7,10,16H,1H2,(H,17,22)(H2,11,12,13)/t4-,6-,7-,10-,21+/m1/s1
InChIKeyOMSUUENXGWGOLC-LHKKBNDGSA-N
SMILES
SoftwareSMILES
CACTVS 3.385Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH]4O[P](O)(=S)O[CH]34
ACDLabs 12.01S=P1(OC2C(OC(C2O1)CO)n3c4ncnc(N)c4nc3)O
OpenEye OEToolkits 1.9.2c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)CO)O[P@](=S)(O4)O)N
CACTVS 3.385Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@H]4O[P@](O)(=S)O[C@@H]34
OpenEye OEToolkits 1.9.2c1nc(c2c(n1)n(cn2)C3C4C(C(O3)CO)OP(=S)(O4)O)N
FormulaC10 H12 N5 O5 P S
Name[(3aR,4R,6R,6aR)-4-(6-aminopurin-9-yl)-2-oxidanyl-2-sulfanylidene-3a,4,6,6a-tetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-6-yl]methanol;
ADENOSINE-2',3'-CYCLOPHOSPHOROTHIOATE
ChEMBL
DrugBank
ZINC
PDB chain2ypc Chain A Residue 1379 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2ypc Crystallographic Analysis of the Reaction Cycle of 2',3'-Cyclic Nucleotide 3'-Phosphodiesterase, a Unique Member of the 2H Phosphoesterase Family
Resolution1.894 Å
Binding residue
(original residue number in PDB)
Y168 T232 F235 T311 P320 V321
Binding residue
(residue number reindexed from 1)
Y6 T70 F73 T149 P158 V159
Annotation score1
Enzymatic activity
Enzyme Commision number 3.1.4.37: 2',3'-cyclic-nucleotide 3'-phosphodiesterase.
Gene Ontology
Molecular Function
GO:0004113 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
Biological Process
GO:0009214 cyclic nucleotide catabolic process
Cellular Component
GO:0016020 membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:2ypc, PDBe:2ypc, PDBj:2ypc
PDBsum2ypc
PubMed23831225
UniProtP16330|CN37_MOUSE 2',3'-cyclic-nucleotide 3'-phosphodiesterase (Gene Name=Cnp)

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