Structure of PDB 2y4m Chain A Binding Site BS01

Receptor Information
>2y4m Chain A (length=377) Species: 518766 (Rhodothermus marinus DSM 4252) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLVVFPFKHEHPEVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAP
EISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDA
DITSFGPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFALLW
PHTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVA
AGVSIYECYIPEGKAHRLLDDLRTMLVECFAAIQSLQHEVVGQPAIHRQE
HPHRVPVHIAERVGYDVEATLHRLMQHWTPRQVELLELFTTPVREGLRTC
QRRPAFNFMDEMAWAATYHVLLEHFQPGDPDWEELLFKLWTTRVLNYTMT
VALRGYDYAQQYLYRMLGRYRYQAALE
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain2y4m Chain A Residue 400 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2y4m Substrate and Metal Ion Promiscuity in Mannosylglycerate Synthase.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		D102 H217
Binding residue
(residue number reindexed from 1)		D101 H216
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.217: mannosyl-3-phosphoglycerate synthase.
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:2y4m, PDBe:2y4m, PDBj:2y4m
PDBsum2y4m
PubMed21288903
UniProtD0MI02

[Back to BioLiP]