Structure of PDB 2xvl Chain A Binding Site BS01

Receptor Information
>2xvl Chain A (length=944) Species: 155077 (Cellvibrio japonicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ALAQVERTAEGVVLTLPEGTVKKLRLQVMGERIIRVTALPGTDFGIVPES
IQVVAKPATNVPFSVDQAGEKLVLKTSQVSAEVSLLDGTVSFRDAKGNVL
LQEENRGTFSPVIHDPDPVDADSYALRQEFNRGSDEGFFGLGQHQNGQVN
YAGENVELTTYNLVISIPFLVSSRNYGLLWDNNSITRFGDPREAQPLNQS
LKLYDAEGKEGGLTVRYFVGDELKLTRVEADFNHQFYKQGNELENPFPEE
VAGAYKNNTLRIELEGSIEAQATGKHQFKMYNSGYAQLSLDGEVVLDRWR
MNWNPWYHNFYRELNAGDKHKLKVSWKPDGGFFHLRHLDPLPANEQHELS
LASETGKAIDYYFVAGDTKDDIISGYRQLTGKSVMLPKWAYGFWQSRERY
KSSDEIIQNLKEYRDRKIPIDNIVLDWSYWPEDAWGSHDFDKQFFPDPKA
LVDKVHAMNAQIMISVWPKFYPTTDNYKELNAKGFMFNRNLDEKNLDWIG
KGYLNAFYDPFSPEATAIFWKQIRDKINVHGFDAWWLDAVEPDIHSNLTF
EKRKWLMTPNARGNGAEIFNAYAVPHAEGVYQGELATDGDKRSFILTRSG
FGGIQRTGSAIWSGDIVSRWSDMKDQIAAGIGTNLAGVTNWTFDIGGFTP
EDRFRHGKKGFVGSWTALDAEQVDEWQELNTRWYQFGAFVPLYRSHGQNP
YREIFNIADEGTEVYNAMVWYTKLRYYLMPYIYTLGGDTYHKDGTIMRGL
VMDFPNDRKAWDINTQYMFGPAFLVNPVYEYKARSRDVYLPAGSDWYNFY
TGEKLAGGQTITADAPLARVPLFVKAGAIVPTGPLIQHVDEGLNSPLLIT
VYTGANGSFDIYEDDGRSLKYQQGEWSRIPLSYDDVTGTLIIGDRVGSFT
GMADERNIRVRFIAGPTADATNFDKAAAEAVTYTGKSVSIKRPR
Ligand information
Ligand IDPXN
InChIInChI=1S/C17H36O8/c1-13(18)5-22-9-17(10-23-6-14(2)19,11-24-7-15(3)20)12-25-8-16(4)21/h13-16,18-21H,5-12H2,1-4H3/t13-,14-,15-,16+/m1/s1
InChIKeyGXEZGLLPFFKHGE-FPCVCCKLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C[C@H](COCC(COC[C@@H](C)O)(COC[C@@H](C)O)COC[C@H](C)O)O
CACTVS 3.370C[C@@H](O)COC[C@](COC[C@H](C)O)(COC[C@@H](C)O)COC[C@@H](C)O
OpenEye OEToolkits 1.7.0CC(COCC(COCC(C)O)(COCC(C)O)COCC(C)O)O
ACDLabs 12.01O(CC(O)C)CC(COCC(O)C)(COCC(O)C)COCC(O)C
CACTVS 3.370C[CH](O)COC[C](COC[CH](C)O)(COC[CH](C)O)COC[CH](C)O
FormulaC17 H36 O8
Name(2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol;
PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH)
ChEMBL
DrugBank
ZINC
PDB chain2xvl Chain A Residue 2001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2xvl Structural and Enzymatic Characterisation of a Glycoside Hydrolase Family 31 Alpha-Xylosidase from Cellvibrio Japonicus Involved in Xyloglucan Saccharification.
Resolution2.3 Å
Binding residue
(original residue number in PDB)
W347 W471 W542 S590
Binding residue
(residue number reindexed from 1)
W303 W427 W498 S546
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.-
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0030246 carbohydrate binding
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:2xvl, PDBe:2xvl, PDBj:2xvl
PDBsum2xvl
PubMed21426303
UniProtB3PBD9

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