Structure of PDB 2wgt Chain A Binding Site BS01

Receptor Information
>2wgt Chain A (length=185) Species: 52275 (Human adenovirus D37) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YDTRTLWTTPDTSPNCTIAQDKDSKLTLVLTKCGSQILANVSLIVVAGKY
HIINNKTNPKIKSFTIKLLFNKNGVLLDNSNLGKAYWNFRSGNSNVSTAY
EKAIGFMPNLVAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTFNQE
TGCEYSITFNFSWSKTYENVEFETTSFTFSYIAQE
Ligand information
Ligand ID18D
InChIInChI=1S/C12H21NO9/c1-2-7(17)13-8-5(15)3-12(21,11(19)20)22-10(8)9(18)6(16)4-14/h5-6,8-10,14-16,18,21H,2-4H2,1H3,(H,13,17)(H,19,20)/t5-,6+,8+,9+,10+,12+/m0/s1
InChIKeyQZBCMZXFDLYCRV-BLMTXZDNSA-N
SMILES
SoftwareSMILES
CACTVS 3.352CCC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)CO)C(O)=O
OpenEye OEToolkits 1.6.1CCC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O)O
ACDLabs 10.04O=C(O)C1(O)OC(C(O)C(O)CO)C(NC(=O)CC)C(O)C1
OpenEye OEToolkits 1.6.1CCC(=O)NC1C(CC(OC1C(C(CO)O)O)(C(=O)O)O)O
CACTVS 3.352CCC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](O)[C@H](O)CO)C(O)=O
FormulaC12 H21 N O9
Name3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid;
3,5-dideoxy-5-(propanoylamino)-D-glycero-alpha-D-galacto-non-2-ulosonic acid;
3,5-dideoxy-5-(propanoylamino)-D-glycero-D-galacto-non-2-ulosonic acid;
3,5-dideoxy-5-(propanoylamino)-D-glycero-galacto-non-2-ulosonic acid
ChEMBL
DrugBank
ZINCZINC000058633548
PDB chain2wgt Chain A Residue 1366 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2wgt Design, Synthesis, and Evaluation of N-Acyl Modified Sialic Acids as Inhibitors of Adenoviruses Causing Epidemic Keratoconjunctivitis.
Resolution1.8 Å
Binding residue
(original residue number in PDB)
Y312 P317 D318 P320 K345
Binding residue
(residue number reindexed from 1)
Y132 P137 D138 P140 K165
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0007155 cell adhesion
GO:0019058 viral life cycle
GO:0019062 virion attachment to host cell
Cellular Component
GO:0019028 viral capsid

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:2wgt, PDBe:2wgt, PDBj:2wgt
PDBsum2wgt
PubMed19456100
UniProtQ64823

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