Structure of PDB 2vo9 Chain A Binding Site BS01

Receptor Information
>2vo9 Chain A (length=149) Species: 40522 (Listeria phage A500) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AMALTEAWLIEKANRKLNAGGMYKITSDKTRNVIKKMAKEGIYLCVAQGY
RSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKDVI
WESTTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDAVSGEKIPAA
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain2vo9 Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2vo9 Structural Analysis of the L-Alanoyl-D-Glutamate Endopeptidase Domain of Listeria Bacteriophage Endolysin Ply500 Reveals a New Member of the Las Peptidase Family.
Resolution1.8 Å
Binding residue
(original residue number in PDB)		H80 D87 H133
Binding residue
(residue number reindexed from 1)		H81 D88 H134
Annotation score4
Enzymatic activity
Enzyme Commision number 3.4.24.-
Gene Ontology
Molecular Function
GO:0008233 peptidase activity

View graph for
Molecular Function
External links
PDB RCSB:2vo9, PDBe:2vo9, PDBj:2vo9
PDBsum2vo9
PubMed18560152
UniProtQ37979|AEPE_BPA50 L-alanyl-D-glutamate peptidase (Gene Name=ply)

[Back to BioLiP]