Structure of PDB 2vnd Chain A Binding Site BS01

Receptor Information
>2vnd Chain A (length=207) Species: 666 (Vibrio cholerae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FSHAKNEAVKIYRDHPVSFYCGCEIRWQGKKGIPDLESCGYQVRKQENRA
SRIEWEHVVPAWQFGHQLQCWQQGGRKNCTRTSPEFNQMEADLHNLTPAI
GEVNGNRSNFSFSQWNGIDGVTYGQCEMQVNFKERTAMPPERARGAIART
YLYMSEQYGLRLSKAQNQLMQAWNNQYPVSEWECVRDQKIEKVQGNSNRF
VREQCPN
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain2vnd Chain A Residue 1232 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2vnd Effects of Salt on the Kinetics and Thermodynamic Stability of Endonuclease I from Vibrio Salmonicida and Vibrio Cholerae.
Resolution1.7 Å
Binding residue
(original residue number in PDB)		E79 N127
Binding residue
(residue number reindexed from 1)		E56 N104
Annotation score4
Enzymatic activity
Enzyme Commision number 3.1.21.-
Gene Ontology
Molecular Function
GO:0004518 nuclease activity

View graph for
Molecular Function
External links
PDB RCSB:2vnd, PDBe:2vnd, PDBj:2vnd
PDBsum2vnd
PubMed18312415
UniProtP08038|DRNE_VIBCH Extracellular deoxyribonuclease (Gene Name=dns)

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