Structure of PDB 2rhc Chain A Binding Site BS01
Receptor Information
>2rhc Chain A (length=257) Species:
100226
(Streptomyces coelicolor A3(2)) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG
VEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELAD
ELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHA
APYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSD
IWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNV
CGGLGNY
Ligand information
Ligand ID
NAP
InChI
InChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
XJLXINKUBYWONI-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
Formula
C21 H28 N7 O17 P3
Name
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE;
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
ChEMBL
CHEMBL295069
DrugBank
DB03461
ZINC
PDB chain
2rhc Chain A Residue 301 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
2rhc
Inhibition kinetics and emodin cocrystal structure of a type II polyketide ketoreductase
Resolution
2.1 Å
Binding residue
(original residue number in PDB)
G13 T15 S16 I18 A37 R38 G39 C62 D63 V64 N90 G92 S144 Y157 K161 G188 V190 T192
Binding residue
(residue number reindexed from 1)
G9 T11 S12 I14 A33 R34 G35 C58 D59 V60 N86 G88 S140 Y153 K157 G184 V186 T188
Annotation score
4
Enzymatic activity
Catalytic site (original residue number in PDB)
G17 N114 S144 Y157 K161 Y202
Catalytic site (residue number reindexed from 1)
G13 N110 S140 Y153 K157 Y198
Enzyme Commision number
1.3.1.-
Gene Ontology
Molecular Function
GO:0016491
oxidoreductase activity
Biological Process
GO:0008202
steroid metabolic process
GO:0017000
antibiotic biosynthetic process
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:2rhc
,
PDBe:2rhc
,
PDBj:2rhc
PDBsum
2rhc
PubMed
18205400
UniProt
P16544
|ACT3_STRCO Putative ketoacyl reductase (Gene Name=actIII)
[
Back to BioLiP
]