Structure of PDB 2qqm Chain A Binding Site BS01

Receptor Information
>2qqm Chain A (length=436) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PECSQNYTTPSGVIKSPGFPEKYPNSLECTYIVFAPKMSEIILEFESFDL
EPDGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTPGRIRSSSGILSMVFY
TDSAIAKEGFSANYSVLQSSVSFKCMEALGMESGEIHSDQITASSQYSTN
WSAERSRLNYPENGWTPGEDSYREWIQVDLGLLRFVTAVGTQGAISKETK
KKYYVKTYKIDVSSNGEDWITIKEGNKPVLFQGNTNPTDVVVAVFPKPLI
TRFVRIKPATWETGISMRFEVYGCKITDYPCSGMLGMVSGLISDSQITSS
NQGDRNWMPENIRLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIII
QGGKHRENKVFMRKFKIGYSNNGSDWKMIMDDSKRKAKSFEGNNNYDTPE
LRTFPALSTRFIRIYPERATHGGLGLRMELLGCEVE
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain2qqm Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2qqm Structural studies of neuropilin/antibody complexes provide insights into semaphorin and VEGF binding
Resolution2.0 Å
Binding residue
(original residue number in PDB)		E195 D209 D250 A252 I253
Binding residue
(residue number reindexed from 1)		E51 D61 D102 A104 I105
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:2qqm, PDBe:2qqm, PDBj:2qqm
PDBsum2qqm
PubMed17989695
UniProtO14786|NRP1_HUMAN Neuropilin-1 (Gene Name=NRP1)

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