Structure of PDB 2qje Chain A Binding Site BS01

Receptor Information
>2qje Chain A (length=340) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADA
LNLDGGYIYTAGKCGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKK
ANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSC
APGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVA
FVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLAV
APNHAVVSRSDRAAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLF
NDNTECLAKLGGRPTYEEYLGTEYVTAIANLKKCSLEACA
Ligand information
Ligand IDTVY
InChIInChI=1S/C14H21NO6/c15-6-9(8-4-2-1-3-5-8)20-14-13(19)12(18)11(17)10(7-16)21-14/h1-5,9-14,16-19H,6-7,15H2/t9-,10-,11-,12+,13+,14+/m1/s1
InChIKeyTUDGLRPNTITXOM-TVQXOTEMSA-N
SMILES
SoftwareSMILES
CACTVS 3.385NC[CH](O[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)c2ccccc2
CACTVS 3.385NC[C@@H](O[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O)c2ccccc2
OpenEye OEToolkits 2.0.7c1ccc(cc1)[C@@H](CN)O[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O
ACDLabs 12.01c1cccc(c1)C(OC2C(O)C(C(C(O2)CO)O)O)CN
OpenEye OEToolkits 2.0.7c1ccc(cc1)C(CN)OC2C(C(C(C(O2)CO)O)O)O
FormulaC14 H21 N O6
Name(1S)-2-amino-1-phenylethyl alpha-D-mannopyranoside
ChEMBL
DrugBank
ZINC
PDB chain2qje Chain D Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2qje Crystal structure of the complex of Bovine C-lobe with Amygdalin at 2.3A resolution
Resolution2.3 Å
Binding residue
(original residue number in PDB)
T430 L651 G652 Y660
Binding residue
(residue number reindexed from 1)
T89 L310 G311 Y319
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.21.-
Gene Ontology
Cellular Component
GO:0005576 extracellular region

View graph for
Cellular Component
External links
PDB RCSB:2qje, PDBe:2qje, PDBj:2qje
PDBsum2qje
PubMed
UniProtP24627|TRFL_BOVIN Lactotransferrin (Gene Name=LTF)

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