Structure of PDB 2oog Chain A Binding Site BS01

Receptor Information

>2oog Chain A (length=267) Species: 158879 (Staphylococcus aureus subsp. aureus N315) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

QWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRT
KDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARA
SYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLL
NNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLK
EIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGV
DGVFTNFADKYKEVIKE

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

2oog Chain A Residue 403 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	2oog Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase from Staphylococcus Aureus
Resolution	2.2 Å
Binding residue (original residue number in PDB)	E87 D89 E169
Binding residue (residue number reindexed from 1)	E44 D46 E126
Annotation score	1

Enzymatic activity

Catalytic site (original residue number in PDB)	H59 R60 E87 D89 H102 E169 K171 N299
Catalytic site (residue number reindexed from 1)	H16 R17 E44 D46 H59 E126 K128 N256
Enzyme Commision number	3.1.4.46: glycerophosphodiester phosphodiesterase.

Gene Ontology

	Molecular Function
GO:0008081	phosphoric diester hydrolase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006629	lipid metabolic process

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Molecular Function

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Biological Process

External links

PDB	RCSB:2oog, PDBe:2oog, PDBj:2oog
PDBsum	2oog
PubMed
UniProt	A0A0H3K7S1

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