Structure of PDB 2jpp Chain A Binding Site BS01

Receptor Information
>2jpp Chain A (length=53) Species: 294 (Pseudomonas fluorescens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLILTRKVGESINIGDDITITILGVSGQQVRIGINAPKDVAVHREEIYQR
IQA
Ligand information
>2jpp Chain C (length=20) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gggcuucacggaugaagccc
<<<<<<<......>>>>>>>
Receptor-Ligand Complex Structure
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PDB2jpp Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA
ResolutionN/A
Binding residue
(original residue number in PDB)		M1 L2 I3 L4 T5
Binding residue
(residue number reindexed from 1)		M1 L2 I3 L4 T5
Binding affinityPDBbind-CN: Kd=85nM
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0048027 mRNA 5'-UTR binding
Biological Process
GO:0006109 regulation of carbohydrate metabolic process
GO:0006402 mRNA catabolic process
GO:0006417 regulation of translation
GO:0045947 negative regulation of translational initiation
GO:0045948 positive regulation of translational initiation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Cellular Component
External links
PDB RCSB:2jpp, PDBe:2jpp, PDBj:2jpp
PDBsum2jpp
PubMed17704818
UniProtP0DPC3|CSRA1_PSEPH Translational regulator CsrA1 (Gene Name=csrA1)

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