Structure of PDB 2jh9 Chain A Binding Site BS01

Receptor Information
>2jh9 Chain A (length=613) Species: 10900 (Bluetongue virus (serotype 10 / American isolate)) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PEPHAVLYVTNELSHIVKDGFLPIWKLTGDESLNDLWLENGKYATDVYAY
GDVSKWTIRQLRGHGFIFISTHKNVQLADIIKTVDVRIPREVARSHDMKA
FENEIGRRRIRMRKGFGDALRNYAFKMAIEFHGSEAETLNDANPRLHKIY
GMPEIPPLYMEYAEIGTRFDDEPTDEKLVSMLDYIVYSAEEVHYIGCGDL
RTLMQFKKRSPGRFRRVLWHVYDPIAPECSDPNVIVHNIMVDSKKDILKH
MNFLKRVERLFIWDVSSDEWETTRFAEDRLGEEIAYEMGGAFSSALIKHR
IPNSKDEYHCISTYLFPQPGADADMYELRNFMRLRGYSHVDRHMHPDASV
TKVVSRDVRKMVELYHGRDRGRFLKKRLFEHLHIVRKNGLLHESDEPRAD
LFYLTNRCNMGLEPSIYEVMKKSVIATAWVGRAPLYDYDDFALPRSTVML
NGSYRDIRILDGNGAILFLMWRYPDIVKKDLTYDPAWAMNFAVSLKEPIP
DPPVPDISLCRFIGLRVESSVLRVRNPTDLSGHLYVTLMSGAYVTDLFWW
FKMILDWSAQNREQKLRDLKRSAAEVIEWVRNDLIAALREYKRKMGMREG
ASIDSWLELLRHL
Ligand information
Ligand IDGTP
InChIInChI=1S/C10H16N5O14P3/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1
InChIKeyXKMLYUALXHKNFT-UUOKFMHZSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
CACTVS 3.370NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
CACTVS 3.370NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
OpenEye OEToolkits 1.7.6c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
ACDLabs 12.01O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
FormulaC10 H16 N5 O14 P3
NameGUANOSINE-5'-TRIPHOSPHATE
ChEMBLCHEMBL1233147
DrugBankDB04137
ZINCZINC000060094177
PDB chain2jh9 Chain A Residue 1645 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2jh9 Bluetongue Virus Vp4 is an RNA-Capping Assembly Line.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		R282 I309 Y334 R367
Binding residue
(residue number reindexed from 1)		R274 I301 Y326 R359
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0019028 viral capsid
GO:0039624 viral outer capsid

View graph for
Cellular Component
External links
PDB RCSB:2jh9, PDBe:2jh9, PDBj:2jh9
PDBsum2jh9
PubMed17417654
UniProtP07132|VP4_BTV10 Core protein VP4 (Gene Name=Segment-4)

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