Structure of PDB 2ipi Chain A Binding Site BS01

Receptor Information
>2ipi Chain A (length=492) Species: 33899 (Streptomyces galilaeus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ALVKVDRVDRRYQDLVTRGFNGRFRGRPDVVYVVHTADQVVDAVNQAMAA
GQRIAVRSGGHCFEGFVDDPAVRAVIDMSQMRQVFYDSGKRAFAVEPGAT
LGETYRALYLDWGVTIPAGVCPQVGVGGHVLGGGYGPLSRRDGVVADHLY
AVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFR
TPGATGTDPSQLLPKAPTSTLRHIVTWDWSALTEEAFTRIIDNHGAWHQS
NSAAGTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVN
EGTGVEPAVQRSTEPWLRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAA
TLYRHLSADSQVWGEVSLYSYGGKVNSVPETATATAQRDSIIKVWMSATW
MDPAHDDANLAWIREIYREIFATTGGVPVPDDRTEGTFINYPDVDLVDER
WNTSGVPWYTLYYKGNYPRLQKVKARWDPRDVFRHALSVRPP
Ligand information
Ligand IDAKY
InChIInChI=1S/C42H53NO15/c1-8-42(51)17-28(33-22(35(42)41(50)52-7)14-23-34(38(33)49)37(48)32-21(36(23)47)10-9-11-26(32)45)56-30-15-24(43(5)6)39(19(3)54-30)58-31-16-27(46)40(20(4)55-31)57-29-13-12-25(44)18(2)53-29/h9-11,14,18-20,24,27-31,35,39-40,45-46,49,51H,8,12-13,15-17H2,1-7H3/t18-,19+,20+,24-,27+,28-,29+,30-,31+,35-,39+,40-,42+/m0/s1
InChIKeyUSZYSDMBJDPRIF-JAFKFOJZSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC[C@]1(C[C@@H](c2c(cc3c(c2O)C(=O)c4c(cccc4O)C3=O)[C@H]1C(=O)OC)O[C@H]5C[C@@H]([C@@H]([C@H](O5)C)O[C@@H]6C[C@H]([C@H]([C@H](O6)C)O[C@@H]7CCC(=O)[C@@H](O7)C)O)N(C)C)O
CACTVS 3.341CC[C]1(O)C[CH](O[CH]2C[CH]([CH](O[CH]3C[CH](O)[CH](O[CH]4CCC(=O)[CH](C)O4)[CH](C)O3)[CH](C)O2)N(C)C)c5c(O)c6C(=O)c7c(O)cccc7C(=O)c6cc5[CH]1C(=O)OC
ACDLabs 10.04O=C2c1cc7c(c(O)c1C(=O)c3c2cccc3O)C(OC6OC(C(OC5OC(C(OC4OC(C(=O)CC4)C)C(O)C5)C)C(N(C)C)C6)C)CC(O)(CC)C7C(=O)OC
OpenEye OEToolkits 1.5.0CCC1(CC(c2c(cc3c(c2O)C(=O)c4c(cccc4O)C3=O)C1C(=O)OC)OC5CC(C(C(O5)C)OC6CC(C(C(O6)C)OC7CCC(=O)C(O7)C)O)N(C)C)O
CACTVS 3.341CC[C@@]1(O)C[C@H](O[C@H]2C[C@@H]([C@H](O[C@@H]3C[C@@H](O)[C@@H](O[C@@H]4CCC(=O)[C@H](C)O4)[C@@H](C)O3)[C@@H](C)O2)N(C)C)c5c(O)c6C(=O)c7c(O)cccc7C(=O)c6cc5[C@H]1C(=O)OC
FormulaC42 H53 N O15
NameMETHYL (2S,4R)-2-ETHYL-2,5,7-TRIHYDROXY-6,11-DIOXO-4-{[2,3,6-TRIDEOXY-4-O-{2,6-DIDEOXY-4-O-[(2S,6S)-6-METHYL-5-OXOTETRAHYDRO-2H -PYRAN-2-YL]-ALPHA-D-LYXO-HEXOPYRANOSYL}-3-(DIMETHYLAMINO)-D-RIBO-HEXOPYRANOSYL]OXY}-1,2,3,4,6,11-HEXAHYDROTETRACENE-1-C ARBOXYLATE;
ACLACINOMYCIN Y
ChEMBL
DrugBank
ZINCZINC000098208660
PDB chain2ipi Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2ipi Structure determination by multiwavelength anomalous diffraction of aclacinomycin oxidoreductase: indications of multidomain pseudomerohedral twinning.
Resolution1.65 Å
Binding residue
(original residue number in PDB)
F72 T336 F339 W372 Y378 W404 T408 Y450
Binding residue
(residue number reindexed from 1)
F63 T327 F330 W363 Y369 W395 T399 Y441
Annotation score5
Enzymatic activity
Enzyme Commision number 1.1.3.45: aclacinomycin-N oxidase.
1.3.3.14: aclacinomycin-A oxidase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016491 oxidoreductase activity
GO:0050660 flavin adenine dinucleotide binding
GO:0071949 FAD binding
Biological Process
GO:0017000 antibiotic biosynthetic process

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Molecular Function

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Biological Process
External links
PDB RCSB:2ipi, PDBe:2ipi, PDBj:2ipi
PDBsum2ipi
PubMed17242508
UniProtQ0PCD7|AKNOX_STRGJ Aclacinomycin-N/aclacinomycin-A oxidase (Gene Name=aknOx)

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