Structure of PDB 2i3g Chain A Binding Site BS01
Receptor Information
>2i3g Chain A (length=347) Species:
83332
(Mycobacterium tuberculosis H37Rv) [
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VANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTL
GEHHPHLTPLAHRVVEPTEAAVLGGHDAVFLALPHGHSAVLAQQLSPETL
IIDCGADFRLTDAAVWERFYGSSHAGSWPYGLPELPGARDQLRGTRRIAV
PGCYPTAALLALFPALAADLIEPAVTVVAVSGTSGAGRAATTDLLGAEVI
GSARAYNIAGVHRHTPEIAQGLRAVTDRDVSVSFTPVLIPASRGILATCT
ARTRSPLSQLRAAYEKAYHAEPFIYLMPEGQLPRTGAVIGSNAAHIAVAV
DEDAQTFVAIAAIDNLVKGTAGAAVQSMNLALGWPETDGLSVVGVAP
Ligand information
Ligand ID
NAP
InChI
InChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
XJLXINKUBYWONI-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
Formula
C21 H28 N7 O17 P3
Name
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE;
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
ChEMBL
CHEMBL295069
DrugBank
DB03461
ZINC
PDB chain
2i3g Chain A Residue 500 [
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Receptor-Ligand Complex Structure
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PDB
2i3g
Crystal Structure of N-acetyl-gamma-glutamyl-phosphate Reductase from Mycobacterium tuberculosis in Complex with NADP(+).
Resolution
1.85 Å
Binding residue
(original residue number in PDB)
G16 S18 G19 Y20 A21 A47 A48 T49 S50 T73 A87 L88 P89 C109 G190 G192 R193 L321 T325
Binding residue
(residue number reindexed from 1)
G11 S13 G14 Y15 A16 A42 A43 T44 S45 T68 A82 L83 P84 C104 G185 G187 R188 L316 T320
Annotation score
4
Enzymatic activity
Enzyme Commision number
1.2.1.38
: N-acetyl-gamma-glutamyl-phosphate reductase.
Gene Ontology
Molecular Function
GO:0003942
N-acetyl-gamma-glutamyl-phosphate reductase activity
GO:0005515
protein binding
GO:0016491
oxidoreductase activity
GO:0016620
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0051287
NAD binding
GO:0070401
NADP+ binding
Biological Process
GO:0006526
L-arginine biosynthetic process
Cellular Component
GO:0005737
cytoplasm
View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:2i3g
,
PDBe:2i3g
,
PDBj:2i3g
PDBsum
2i3g
PubMed
17316682
UniProt
P9WPZ9
|ARGC_MYCTU N-acetyl-gamma-glutamyl-phosphate reductase (Gene Name=argC)
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