Structure of PDB 2glu Chain A Binding Site BS01

Receptor Information

>2glu Chain A (length=234) Species: 1423 (Bacillus subtilis)

HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEM
VEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRK
AVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLS
EWQAMFSANQLAYQDIQKWNLPIQYDSWIKRGGTPADREKQIITHLNHAS
DEARDTFCITLNQNGQPISFCLKAILIQGIKREG

Ligand information

• Ligand ID: SAM
• InChI: InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/t7-,8+,10+,11+,14+,27-/m0/s1
• InChIKey: MEFKEPWMEQBLKI-FCKMPRQPSA-N
• SMILES:
  CACTVS 3.341: C[S@@+](CC[C@H](N)C([O-])=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
  OpenEye OEToolkits 1.5.0: C[S+](CCC(C(=O)[O-])N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O
  CACTVS 3.341: C[S+](CC[CH](N)C([O-])=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
  OpenEye OEToolkits 1.5.0: C[S@@+](CC[C@@H](C(=O)[O-])N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O
  ACDLabs 10.04: [O-]C(=O)C(N)CC[S+](C)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O
• Formula: C15 H22 N6 O5 S
• Name: S-ADENOSYLMETHIONINE
• ChEMBL: CHEMBL1235831
• PDB chain: 2glu Chain A Residue 301

Receptor-Ligand Complex Structure

Structure summary

• PDB: 2glu The crystal structure of YcgJ protein from Bacillus subitilis
• Resolution: 2.91 Å
• Binding residue (original residue number in PDB): G20 A21 D41 A42 T43 T68 A69 E70 R85 H90 F91
• Binding residue (residue number reindexed from 1): G24 A25 D45 A46 T47 T72 A73 E74 R89 H94 F95
• Annotation score: 4

Enzymatic activity

• Enzyme Commision number: 2.1.1.-

Gene Ontology

Molecular Function

• GO:0008168 methyltransferase activity
• GO:0008757 S-adenosylmethionine-dependent methyltransferase activity

Biological Process

• GO:0032259 methylation

External links

• PDB: RCSB:2glu, PDBe:2glu, PDBj:2glu
• PDBsum: 2glu
• UniProt: O31474|YCGJ_BACSU Uncharacterized methyltransferase YcgJ (Gene Name=ycgJ)