Structure of PDB 2g5r Chain A Binding Site BS01

Receptor Information
>2g5r Chain A (length=114) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KDYSLTMQSSVTVQEGMCVHVRCSFSYPSQTDSDPVHGYWFRAGKAPVAT
NNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNI
KWNYKYDQLSVNVT
Ligand information
Ligand IDNXD
InChIInChI=1S/C14H23N3O10/c1-5(18)17-8-6(19)3-14(26-2,13(24)25)27-10(8)9(21)7(20)4-16-12(23)11(15)22/h6-10,19-21H,3-4H2,1-2H3,(H2,15,22)(H,16,23)(H,17,18)(H,24,25)/t6-,7+,8+,9+,10+,14+/m0/s1
InChIKeyKJWFCLCEUZUZFP-BYBVIHBISA-N
SMILES
SoftwareSMILES
CACTVS 3.341CO[C]1(C[CH](O)[CH](NC(C)=O)[CH](O1)[CH](O)[CH](O)CNC(=O)C(N)=O)C(O)=O
ACDLabs 10.04O=C(N)C(=O)NCC(O)C(O)C1OC(OC)(C(=O)O)CC(O)C1NC(=O)C
OpenEye OEToolkits 1.5.0CC(=O)NC1C(CC(OC1C(C(CNC(=O)C(=O)N)O)O)(C(=O)O)OC)O
OpenEye OEToolkits 1.5.0CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CNC(=O)C(=O)N)O)O)(C(=O)O)OC)O
CACTVS 3.341CO[C@@]1(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O1)[C@H](O)[C@H](O)CNC(=O)C(N)=O)C(O)=O
FormulaC14 H23 N3 O10
Namemethyl 5-acetamido-9-{[amino(oxo)acetyl]amino}-3,5,9-trideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid;
METHYL 5-(ACETYLAMINO)-9-{[AMINO(OXO)ACETYL]AMINO}-3,5,9-TRIDEOXY-D-GLYCERO-ALPHA-D-GLUCO-NON-2-ULOPYRANOSIDONIC ACID;
ALPHA METHYL -9-(AMINOOXALYL-AMINO)-9-DEOXYNEU5AC;
OXAMIDO-NEU5AC;
methyl 5-acetamido-9-{[amino(oxo)acetyl]amino}-3,5,9-trideoxy-D-glycero-alpha-D-galacto-non-2-ulosidonic acid;
methyl 5-acetamido-9-{[amino(oxo)acetyl]amino}-3,5,9-trideoxy-D-glycero-D-galacto-non-2-ulosidonic acid;
methyl 5-acetamido-9-{[amino(oxo)acetyl]amino}-3,5,9-trideoxy-D-glycero-galacto-non-2-ulosidonic acid
ChEMBLCHEMBL1234863
DrugBank
ZINCZINC000038191920
PDB chain2g5r Chain A Residue 145 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2g5r The structure of siglec-7 in complex with sialosides: leads for rational structure-based inhibitor design.
Resolution1.6 Å
Binding residue
(original residue number in PDB)
R124 K131 W132 N133 K135
Binding residue
(residue number reindexed from 1)
R94 K101 W102 N103 K105
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:2g5r, PDBe:2g5r, PDBj:2g5r
PDBsum2g5r
PubMed16623661
UniProtQ9Y286|SIGL7_HUMAN Sialic acid-binding Ig-like lectin 7 (Gene Name=SIGLEC7)

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