Structure of PDB 2dvu Chain A Binding Site BS01

Receptor Information
>2dvu Chain A (length=325) Species: 267998 (Rhizobium sp. MTP-10005) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MQGKVALEEHFAIPETLQDSAGFVPGDYWKELQHRLLDIQDTRLKLMDAH
GIETMILSLNAPAVQAIPDRRKAIEIARRANDVLAEECAKRPDRFLAFAA
LPLQDPDAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPF
WGEVEKLDVPFYLHPRNPLPQDSRIYDGHPWLLGPTWAFAQETAVHALRL
MASGLFDEHPRLNIILGHMGEGLPYMMWRIDHRNAWVKLPPRYPAKRRFM
DYFNENFHITTSGNFRTQTLIDAILEIGADRILFSTDWPFENIDHASDWF
NATSIAEADRVKIGRTNARRLFKLD
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain2dvu Chain A Residue 1501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2dvu Crystal Structures of Nonoxidative Zn-Dependent 2,6-Dihydroxybenzoate (gamma-Resorcylate) Decarboxylase from Rhizobium sp. Strain MTP-10005
Resolution1.9 Å
Binding residue
(original residue number in PDB)		E8 H10 H164 D287
Binding residue
(residue number reindexed from 1)		E8 H10 H164 D287
Annotation score1
Enzymatic activity
Enzyme Commision number 4.1.1.103: gamma-resorcylate decarboxylase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0016831 carboxy-lyase activity
GO:0046872 metal ion binding
Biological Process
GO:0019748 secondary metabolic process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:2dvu, PDBe:2dvu, PDBj:2dvu
PDBsum2dvu
PubMed
UniProtQ60GU1|GRDC_RHIS5 Gamma-resorcylate decarboxylase (Gene Name=graF)

[Back to BioLiP]