Structure of PDB 2dpt Chain A Binding Site BS01

Receptor Information
>2dpt Chain A (length=232) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFS
PGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEG
CASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGT
LFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACE
IPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQ
Ligand information
Ligand IDPUY
InChIInChI=1S/C22H29N7O5/c1-28(2)19-17-20(25-10-24-19)29(11-26-17)22-18(31)16(15(9-30)34-22)27-21(32)14(23)8-12-4-6-13(33-3)7-5-12/h4-7,10-11,14-16,18,22,30-31H,8-9,23H2,1-3H3,(H,27,32)/t14-,15+,16+,18+,22+/m0/s1
InChIKeyRXWNCPJZOCPEPQ-NVWDDTSBSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C(NC3C(OC(n2cnc1c2ncnc1N(C)C)C3O)CO)C(N)Cc4ccc(OC)cc4
CACTVS 3.341COc1ccc(C[C@H](N)C(=O)N[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO)n3cnc4c(ncnc34)N(C)C)cc1
OpenEye OEToolkits 1.5.0CN(C)c1c2c(ncn1)n(cn2)C3C(C(C(O3)CO)NC(=O)C(Cc4ccc(cc4)OC)N)O
OpenEye OEToolkits 1.5.0CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)NC(=O)[C@H](Cc4ccc(cc4)OC)N)O
CACTVS 3.341COc1ccc(C[CH](N)C(=O)N[CH]2[CH](O)[CH](O[CH]2CO)n3cnc4c(ncnc34)N(C)C)cc1
FormulaC22 H29 N7 O5
NamePUROMYCIN
ChEMBLCHEMBL469912
DrugBankDB08437
ZINCZINC000053147179
PDB chain2dpt Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2dpt Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog
Resolution2.75 Å
Binding residue
(original residue number in PDB)		F47 W49 W59 E108 M144 F153 G155 E156 S157 M158 C187 Q188
Binding residue
(residue number reindexed from 1)		F46 W48 W58 E107 M143 F152 G154 E155 S156 M157 C186 Q187
Annotation score1
Enzymatic activity
Enzyme Commision number 2.3.2.6: lysine/arginine leucyltransferase.
Gene Ontology
Molecular Function
GO:0008914 leucyl-tRNA--protein transferase activity
GO:0016746 acyltransferase activity
GO:0016755 aminoacyltransferase activity
Biological Process
GO:0030163 protein catabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2dpt, PDBe:2dpt, PDBj:2dpt
PDBsum2dpt
PubMed17110926
UniProtP0A8P1|LFTR_ECOLI Leucyl/phenylalanyl-tRNA--protein transferase (Gene Name=aat)

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