Structure of PDB 2def Chain A Binding Site BS01

Receptor Information
>2def Chain A (length=146) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQV
DIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVP
RAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLS
Ligand information
Ligand IDNI
InChIInChI=1S/Ni/q+2
InChIKeyVEQPNABPJHWNSG-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ni++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ni+2]
FormulaNi
NameNICKEL (II) ION
ChEMBL
DrugBankDB14204
ZINC
PDB chain2def Chain A Residue 148 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2def Solution structure of nickel-peptide deformylase.
ResolutionN/A
Binding residue
(original residue number in PDB)		C90 I93 H132 H136
Binding residue
(residue number reindexed from 1)		C89 I92 H131 H135
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) G45 Q50 C90 L91 H132 E133 H136
Catalytic site (residue number reindexed from 1) G44 Q49 C89 L90 H131 E132 H135
Enzyme Commision number 3.5.1.88: peptide deformylase.
Gene Ontology
Molecular Function
GO:0042586 peptide deformylase activity

View graph for
Molecular Function
External links
PDB RCSB:2def, PDBe:2def, PDBj:2def
PDBsum2def
PubMed9665852
UniProtP0A6K3|DEF_ECOLI Peptide deformylase (Gene Name=def)

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