Structure of PDB 2ddx Chain A Binding Site BS01

Receptor Information
>2ddx Chain A (length=324) Species: 247155 (Vibrio sp. AX-4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LDGVLVPESGILVSVGQDVDSVNDYASALGTIPAGVTNYVGIVNLDGLNS
DADAGAGRNNIAELANAYPTSALVVGVSMNGEVDAVASGRYNANIDTLLN
TLAGYDRPVYLRWAYEVDGPWNGHSPSGIVTSFQYVHDRIIALGHQAKIS
LVWQVASYCPTPGGQLDQWWPGSEYVDWVGLSYFAPQDCNWDRVNEAAQF
ARSKGKPLFLNESTPQRYQVADLTYSADPAKGTNRQSKTSQQLWDEWFAP
YFQFMSDNSDIVKGFTYINADWDSQWRWAAPYNEGYWGDSRVQANALIKS
NWQQEIAKGQYINHSETLFETLGY
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain2ddx Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2ddx Atomic resolution analysis of beta-1,3-xylanase catalytic module from Vibrio sp. AX-4
Resolution0.86 Å
Binding residue
(original residue number in PDB)		L1 G3 L5 S150 D177
Binding residue
(residue number reindexed from 1)		L1 G3 L5 S150 D177
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.1.32: endo-1,3-beta-xylanase.
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

View graph for
Molecular Function
External links
PDB RCSB:2ddx, PDBe:2ddx, PDBj:2ddx
PDBsum2ddx
PubMed
UniProtD5MP61|3XYN1_VIBSX Beta-1,3-xylanase XYL4 (Gene Name=xyl4)

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