Structure of PDB 2d3m Chain A Binding Site BS01

Receptor Information
>2d3m Chain A (length=405) Species: 45385 (Aloe arborescens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPGMSSLSNSLPLMEDVQGIRKAQKADGTATVMAIGTAHPPHIFPQDTYA
DVYFRATNSEHKVELKKKFDHICKKTMIGKRYFNYDEEFLKKYPNITSYD
EPSLNDRQDICVPGVPALGTEAAVKAIEEWGRPKSEITHLVFCTSCGVDM
PSADFQCAKLLGLHANVNKYCIYMQGCYAGGTVMRYAKDLAENNRGARVL
VVCAELTIMMLRAPNETHLDNAIGISLFGDGAAALIIGSDPIIGVEKPMF
EIVCTKQTVIPNTEDVIHLHLRETGMMFYLSKGSPMTISNNVEACLIDVF
KSVGITPPEDWNSLFWIPHPGGRAILDQVEAKLKLRPEKFRAARTVLWDY
GNMVSASVGYILDEMRRKSAAKGLETYGEGLEWGVLLGFGPGITVETILL
HSLPL
Ligand information
Ligand IDCOA
InChIInChI=1S/C21H36N7O16P3S/c1-21(2,16(31)19(32)24-4-3-12(29)23-5-6-48)8-41-47(38,39)44-46(36,37)40-7-11-15(43-45(33,34)35)14(30)20(42-11)28-10-27-13-17(22)25-9-26-18(13)28/h9-11,14-16,20,30-31,48H,3-8H2,1-2H3,(H,23,29)(H,24,32)(H,36,37)(H,38,39)(H2,22,25,26)(H2,33,34,35)/t11-,14-,15-,16+,20-/m1/s1
InChIKeyRGJOEKWQDUBAIZ-IBOSZNHHSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCS)O
CACTVS 3.341CC(C)(CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCS
OpenEye OEToolkits 1.5.0CC(C)(CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCS)O
CACTVS 3.341CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCS
ACDLabs 10.04O=C(NCCS)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O
FormulaC21 H36 N7 O16 P3 S
NameCOENZYME A
ChEMBLCHEMBL1213327
DrugBankDB01992
ZINCZINC000008551087
PDB chain2d3m Chain A Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2d3m Structural Insight into Chain-Length Control and Product Specificity of Pentaketide Chromone Synthase from Aloe arborescens
Resolution1.6 Å
Binding residue
(original residue number in PDB)		H71 K75 A177 I223 L227 F278 L280 S281 G321 G322 R323 A324 I325
Binding residue
(residue number reindexed from 1)		H71 K75 A177 I223 L227 F278 L280 S281 G321 G322 R323 A324 I325
Annotation score3
Enzymatic activity
Catalytic site (original residue number in PDB) C177 F228 H319 N352
Catalytic site (residue number reindexed from 1) C177 F228 H319 N352
Enzyme Commision number 2.3.1.216: 5,7-dihydroxy-2-methylchromone synthase.
Gene Ontology
Molecular Function
GO:0016746 acyltransferase activity
GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups
GO:0042803 protein homodimerization activity
Biological Process
GO:0009058 biosynthetic process
GO:0009813 flavonoid biosynthetic process
GO:0030639 polyketide biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:2d3m, PDBe:2d3m, PDBj:2d3m
PDBsum2d3m
PubMed17462571
UniProtQ58VP7|PCS_ALOAR 5,7-dihydroxy-2-methylchromone synthase

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