Structure of PDB 2ai2 Chain A Binding Site BS01

Receptor Information
>2ai2 Chain A (length=274) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSE
IPNFPESGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGV
ETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVR
FPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRL
LRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHE
EVLEAGKQAAQKLEQFVSLLMASI
Ligand information
Ligand IDP1D
InChIInChI=1S/C13H16N3O8P/c17-2-6-11-12(24-7(23-11)3-25(19,20)21)10(22-6)5-1-14-9-8(5)15-4-16-13(9)18/h1,4,6-7,10-12,14,17H,2-3H2,(H,15,16,18)(H2,19,20,21)/t6-,7-,10+,11-,12+/m1/s1
InChIKeyZOEDLCUBOBTIHG-USQSKNHBSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[CH]1O[CH]([CH]2O[CH](C[P](O)(O)=O)O[CH]12)c3c[nH]c4C(=O)NC=Nc34
ACDLabs 10.04O=C1NC=Nc2c1ncc2C3OC(C4OC(OC34)CP(=O)(O)O)CO
OpenEye OEToolkits 1.5.0c1c(c2c([nH]1)C(=O)NC=N2)C3C4C(C(O3)CO)OC(O4)CP(=O)(O)O
OpenEye OEToolkits 1.5.0c1c(c2c([nH]1)C(=O)NC=N2)[C@H]3[C@H]4[C@@H]([C@H](O3)CO)O[C@H](O4)CP(=O)(O)O
CACTVS 3.341OC[C@H]1O[C@H]([C@@H]2O[C@H](C[P](O)(O)=O)O[C@H]12)c3c[nH]c4C(=O)NC=Nc34
FormulaC13 H16 N3 O8 P
Name((2S,3AS,4R,6S)-4-(HYDROXYMETHYL)-6-(4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-TETRAHYDROFURO[3,4-D][1,3]DIOXO L-2-YL)METHYLPHOSPHONIC ACID;
9-DEAZAINOSINE-2',3'-O-ETHYLIDENEPHOSPHONATE
ChEMBL
DrugBankDB04753
ZINCZINC000012504494
PDB chain2ai2 Chain A Residue 293 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2ai2 Novel multisubstrate inhibitors of mammalian purine nucleoside phosphorylase.
Resolution1.7 Å
Binding residue
(original residue number in PDB)
S33 R84 H86 Y88 N115 A116 G118 F200 E201 M219 S220 N243 H257
Binding residue
(residue number reindexed from 1)
S31 R76 H78 Y80 N107 A108 G110 F192 E193 M211 S212 N235 H249
Annotation score1
Binding affinityMOAD: ic50=30nM
Enzymatic activity
Catalytic site (original residue number in PDB) S33 H86 Y88 E89 A116 M219 S220 N243 V245 H257
Catalytic site (residue number reindexed from 1) S31 H78 Y80 E81 A108 M211 S212 N235 V237 H249
Enzyme Commision number 2.4.2.1: purine-nucleoside phosphorylase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004731 purine-nucleoside phosphorylase activity
GO:0016757 glycosyltransferase activity
GO:0016763 pentosyltransferase activity
GO:0047975 guanosine phosphorylase activity
Biological Process
GO:0006139 nucleobase-containing compound metabolic process
GO:0006166 purine ribonucleoside salvage
GO:0009116 nucleoside metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:2ai2, PDBe:2ai2, PDBj:2ai2
PDBsum2ai2
PubMed16239721
UniProtP55859|PNPH_BOVIN Purine nucleoside phosphorylase (Gene Name=PNP)

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