Structure of PDB 1zdf Chain A Binding Site BS01

Receptor Information

>1zdf Chain A (length=258) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKA
LEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVF
MDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLL
HVASEQGSFDGGSQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPA
FKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSMTHPQFLNVWWDIFTTS
VVPLLQQF

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

1zdf Chain A Residue 400 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	1zdf Requirements for catalysis in mammalian glycogenin.
Resolution	2.45 Å
Binding residue (original residue number in PDB)	D101 D103 H211
Binding residue (residue number reindexed from 1)	D102 D104 H212
Annotation score	1

Enzymatic activity

Enzyme Commision number

2.4.1.186: glycogenin glucosyltransferase.

Gene Ontology

	Molecular Function
GO:0008466	glycogenin glucosyltransferase activity
GO:0016740	transferase activity
GO:0016757	glycosyltransferase activity
GO:0030145	manganese ion binding
GO:0042803	protein homodimerization activity
GO:0046872	metal ion binding

	Biological Process
GO:0005978	glycogen biosynthetic process

	Cellular Component
GO:0005737	cytoplasm

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Molecular Function

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Cellular Component

External links

PDB	RCSB:1zdf, PDBe:1zdf, PDBj:1zdf
PDBsum	1zdf
PubMed	15849187
UniProt	P13280\|GLYG_RABIT Glycogenin-1 (Gene Name=GYG1)

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