Structure of PDB 1yw4 Chain A Binding Site BS01

Receptor Information
>1yw4 Chain A (length=319) Species: 243365 (Chromobacterium violaceum ATCC 12472) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
THSPSFLQHALSSSDTRAEWPLPGGLAARWLAPGCVELNGDARGADSVLL
SCGVHGNETAPIEVVDGMLTDIAAGQLALNCRLLVMFANLDAIRQGVRYG
NYDMNRLFNGAHARHPELPESVRAAELETLAAEFFAGARARKLHYDLHTA
IRGSVFEKFAIYPFLHRTHKREQLAWLQRCGIEAVLLHTQPANTFSYFTS
QYCEADAFTLELGKARPFGQNDLSRFSGIDGALRGLLSNPQANVPDLDED
KLPLFRAKYDLVKHSFKLNLADSVENFTLLPDGMLIAATGGEERILFPNP
AVKPGLRAGIVVEPARLPS
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain1yw4 Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1yw4 Crystal Structure of the Succinylglutamate Desuccinylase from Chromobacterium violaceum, Northeast Structural Genomics Target CvR22.
Resolution2.0 Å
Binding residue
(original residue number in PDB)
H56 E59 H149
Binding residue
(residue number reindexed from 1)
H55 E58 H148
Annotation score1
Enzymatic activity
Enzyme Commision number 3.5.1.96: succinylglutamate desuccinylase.
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding
GO:0009017 succinylglutamate desuccinylase activity
GO:0016787 hydrolase activity
GO:0016788 hydrolase activity, acting on ester bonds
GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
GO:0046872 metal ion binding
Biological Process
GO:0006525 arginine metabolic process
GO:0019544 arginine catabolic process to glutamate
GO:0019545 arginine catabolic process to succinate

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Molecular Function

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Biological Process
External links
PDB RCSB:1yw4, PDBe:1yw4, PDBj:1yw4
PDBsum1yw4
PubMed
UniProtQ7NU26|ASTE_CHRVO Succinylglutamate desuccinylase (Gene Name=astE)

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