Structure of PDB 1ytm Chain A Binding Site BS01

Receptor Information
>1ytm Chain A (length=517) Species: 13335 (Anaerobiospirillum succiniciproducens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLSESLAKYGITGATNIVHNPSHEELFAAETQASLEGFEKGTVTEMGAVN
VMTGVYTGRSPKDKFIVKNEASKEIWWTSDEFKNDNKPVTEEAWAQLKAL
AGKELSNKPLYVVDLFCGANENTRLKIRFVMEVAWQAHFVTNMFIRPTEE
ELKGFEPDFVVLNASKAKVENFKELGLNSETAVVFNLAEKMQIILNTWYG
GEMKKGMFSMMNFYLPLQGIAAMHCSANTDLEGKNTAIFFGLSGTGKTTL
STDPKRLLIGDDEHGWDDDGVFNFEGGCYAKVINLSKENEPDIWGAIKRN
ALLENVTVDANGKVDFADKSVTENTRVSYPIFHIKNIVKPVSKAPAAKRV
IFLSADAFGVLPPVSILSKEQTKYYFLSGFTAKLAGTERGITEPTPTFSS
CFGAAFLTLPPTKYAEVLVKRMEASGAKAYLVNTGWNGTGKRISIKDTRG
IIDAILDGSIDTANTATIPYFNFTVPTELKGVDTKILDPRNTYADASEWE
VKAKDLAERFQKNFKKF
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain1ytm Chain A Residue 999 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1ytm Crystal structure of Anaerobiospirillum succiniciproducens PEP carboxykinase reveals an important active site loop
Resolution2.2 Å
Binding residue
(original residue number in PDB)		K206 H225 D263
Binding residue
(residue number reindexed from 1)		K205 H224 D262
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) R60 K206 H225 S244 K248 T249 D263 R327
Catalytic site (residue number reindexed from 1) R59 K205 H224 S243 K247 T248 D262 R326
Enzyme Commision number 4.1.1.49: phosphoenolpyruvate carboxykinase (ATP).
Gene Ontology
Molecular Function
GO:0004611 phosphoenolpyruvate carboxykinase activity
GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity
GO:0005524 ATP binding
GO:0016831 carboxy-lyase activity
GO:0017076 purine nucleotide binding
GO:0046872 metal ion binding
Biological Process
GO:0006094 gluconeogenesis
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1ytm, PDBe:1ytm, PDBj:1ytm
PDBsum1ytm
PubMed15890557
UniProtO09460|PCKA_ANASU Phosphoenolpyruvate carboxykinase (ATP) (Gene Name=pckA)

[Back to BioLiP]